Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG870_RS07330 Genome accession   NZ_CP107902
Coordinates   1499102..1499764 (+) Length   220 a.a.
NCBI ID   WP_266530773.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00461     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494102..1504764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG870_RS07305 (OG870_07290) mug 1495195..1495746 (+) 552 WP_266588527.1 G/U mismatch-specific DNA glycosylase -
  OG870_RS07310 (OG870_07295) - 1495724..1496134 (-) 411 WP_266530765.1 hypothetical protein -
  OG870_RS07315 (OG870_07300) - 1496176..1496898 (-) 723 WP_266586254.1 ABC transporter permease subunit -
  OG870_RS07320 (OG870_07305) - 1496901..1497821 (-) 921 WP_266586252.1 ABC transporter ATP-binding protein -
  OG870_RS07325 (OG870_07310) - 1497930..1499087 (+) 1158 WP_266586250.1 histidine kinase -
  OG870_RS07330 (OG870_07315) vraR 1499102..1499764 (+) 663 WP_266530773.1 response regulator transcription factor Regulator
  OG870_RS07335 (OG870_07320) - 1499924..1501081 (+) 1158 WP_266530774.1 ROK family transcriptional regulator -
  OG870_RS07340 (OG870_07325) - 1501152..1501913 (-) 762 WP_327690775.1 GntR family transcriptional regulator -
  OG870_RS07345 (OG870_07330) - 1502104..1502988 (-) 885 WP_266530778.1 RNA polymerase sigma-70 factor -
  OG870_RS07350 (OG870_07335) - 1503100..1503753 (+) 654 WP_327690776.1 NAD(P)-binding domain-containing protein -
  OG870_RS07355 (OG870_07340) - 1503854..1504180 (-) 327 WP_327692299.1 transposase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23684.27 Da        Isoelectric Point: 4.7964

>NTDB_id=648382 OG870_RS07330 WP_266530773.1 1499102..1499764(+) (vraR) [Streptomyces sp. NBC_00461]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRLRPDVVAMDVRMPLLDGIEATRAVLRTVDEPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGESDGNRAARDAMERARLTER
EAEVLRLMARGLSNAEIAARLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=648382 OG870_RS07330 WP_266530773.1 1499102..1499764(+) (vraR) [Streptomyces sp. NBC_00461]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAGCCCCTCGTACGCGCCGGTCTGCGGGCCGTTCTGGAGGCGCAGCCCGA
CATCGAGGTCGTTGGGGAGGCCGCCGACGGGGCGGCGGTGATCCCGCTCGTGCGCCGGCTGCGGCCCGACGTGGTCGCCA
TGGACGTACGGATGCCGCTGCTGGACGGCATCGAGGCCACGCGCGCGGTGCTGCGGACGGTCGACGAGCCGCCGAAGATC
CTCGTGGTGACGACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCCGGCGCCGACGGGTTCCTGCTGAAGCG
GGCCCGCCCGGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCGGAGGGCGAGTCGCTGCTGTTCCCGGCCTCCGTGCGGC
AGTTGGCCGCCGAGTACGGCGAGAGCGACGGCAACCGGGCCGCCCGGGACGCGATGGAACGGGCCCGGCTGACCGAACGG
GAGGCCGAGGTGTTGCGGCTGATGGCCCGCGGGCTGTCCAACGCGGAGATCGCCGCCCGACTGATCGTCGGCACGGAGAC
AGTGAAGTCGCACGTGAGCGCCGTACTGGCGAAACTCGGCGCGCGTGATCGCACTCAGGCCGTGATCGCCGCGTACGAGT
CGGGCTTCGTGGCCCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.743

99.091

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.377