Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG912_RS31520 Genome accession   NZ_CP107899
Coordinates   7012048..7012698 (-) Length   216 a.a.
NCBI ID   WP_327712278.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7007048..7017698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS31500 (OG912_31505) - 7007740..7008573 (-) 834 WP_327712275.1 alpha/beta fold hydrolase -
  OG912_RS31505 (OG912_31510) sigJ 7008726..7009607 (+) 882 WP_327712276.1 RNA polymerase sigma factor SigJ -
  OG912_RS31510 (OG912_31515) - 7009908..7010675 (+) 768 WP_327712277.1 GntR family transcriptional regulator -
  OG912_RS31515 (OG912_31520) - 7010722..7011879 (-) 1158 WP_326734839.1 ROK family transcriptional regulator -
  OG912_RS31520 (OG912_31525) vraR 7012048..7012698 (-) 651 WP_327712278.1 response regulator transcription factor Regulator
  OG912_RS31525 (OG912_31530) - 7012724..7013896 (-) 1173 WP_327712279.1 histidine kinase -
  OG912_RS31530 (OG912_31535) - 7014004..7014948 (+) 945 WP_327712280.1 ATP-binding cassette domain-containing protein -
  OG912_RS31535 (OG912_31540) - 7014951..7015688 (+) 738 WP_327712281.1 ABC transporter permease -
  OG912_RS31540 (OG912_31545) - 7015780..7016247 (+) 468 WP_327712282.1 SAM-dependent methyltransferase -
  OG912_RS31545 (OG912_31550) - 7016485..7016922 (+) 438 WP_327712284.1 hypothetical protein -
  OG912_RS31550 (OG912_31555) - 7017236..7017643 (-) 408 Protein_6217 mismatch-specific DNA-glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23172.97 Da        Isoelectric Point: 5.8813

>NTDB_id=648371 OG912_RS31520 WP_327712278.1 7012048..7012698(-) (vraR) [Streptomyces sp. NBC_00464]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIKVVGEAGDGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHSVRLVAEGESLLFPAAVRRLAAEYGTSKAREAMEKASLTEREAAV
LRLMARGLSNAEIAARLVVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVSPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=648371 OG912_RS31520 WP_327712278.1 7012048..7012698(-) (vraR) [Streptomyces sp. NBC_00464]
ATGCCGGTTACCGTTCTTCTGGTCGACGACGAACCCCTGGTCCGTGCAGGACTGCGCGCGGTCCTGGAGGCCCAGCCCGA
CATCAAGGTGGTGGGAGAGGCGGGTGACGGCGCCGCGGTGATTCCGTTGGTGCGTCAGCTGCGTCCTGATGTGGTGGCCA
TGGACGTCCGCATGCCGCTGATGGACGGCATCGAGGCGACTCGGGTGGTGCTGCGCACGGTGCCCGACCCACCGAAGATT
CTGGTGGTGACGACGTTCGAAAACGATGAGTACGTCTACGAGGCGCTGCGTGCGGGCGCGGACGGCTTTCTCCTCAAGCG
GGCCCGGCCGGCCGAGATCGTGCACTCGGTGCGGCTCGTGGCAGAGGGCGAGTCCCTGCTGTTCCCGGCCGCGGTCCGCC
GGCTCGCCGCCGAGTACGGCACGAGCAAGGCTCGGGAGGCCATGGAAAAGGCCTCGCTCACCGAGCGCGAAGCGGCCGTG
CTGCGGCTGATGGCCCGAGGTCTGTCCAATGCCGAGATCGCCGCCCGGCTCGTGGTGGGCGTCGAAACGGTGAAGACCCA
TGTCAGCGCCGTGCTGGCGAAGTTGGGGGCGCGGGACCGCACCCAGGCGGTCATCGCCGCCTACGAGTCCGGATTCGTCT
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.639

100

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366