Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG912_RS24695 Genome accession   NZ_CP107899
Coordinates   5504054..5504737 (-) Length   227 a.a.
NCBI ID   WP_327711281.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5499054..5509737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS24670 (OG912_24670) - 5499140..5499976 (-) 837 WP_327711276.1 alpha/beta hydrolase -
  OG912_RS24675 (OG912_24675) - 5500103..5500570 (+) 468 WP_327711277.1 MerR family transcriptional regulator -
  OG912_RS24680 (OG912_24680) - 5500570..5501586 (+) 1017 WP_327711278.1 aldo/keto reductase -
  OG912_RS24685 (OG912_24685) - 5501604..5502812 (-) 1209 WP_327711279.1 acyltransferase -
  OG912_RS24690 (OG912_24690) - 5502809..5503885 (-) 1077 WP_327711280.1 alpha/beta hydrolase -
  OG912_RS24695 (OG912_24695) vraR 5504054..5504737 (-) 684 WP_327711281.1 response regulator transcription factor Regulator
  OG912_RS24700 (OG912_24700) - 5504734..5506113 (-) 1380 WP_327711282.1 sensor histidine kinase -
  OG912_RS24705 (OG912_24705) - 5506223..5507188 (-) 966 WP_327711283.1 DUF4429 domain-containing protein -
  OG912_RS24710 (OG912_24710) - 5507305..5508516 (-) 1212 WP_327711284.1 alpha/beta hydrolase -
  OG912_RS24715 (OG912_24715) - 5508733..5509413 (-) 681 WP_327711285.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24250.09 Da        Isoelectric Point: 5.6980

>NTDB_id=648361 OG912_RS24695 WP_327711281.1 5504054..5504737(-) (vraR) [Streptomyces sp. NBC_00464]
MTIRVIIVDDQAMVRAGFAALLAAQADIDVVGEAPDGRQGVDVSRRTHPDVVLMDVRMPEMDGLAAARELLNPPVGVVHV
PKVLMLTTFDVDDYVYEALRVGASGFLLKDAPPADLISAVRVVAAGDALLAPSVTRRLIADFARQRPSGTTRSGPALRLN
GLTPREKEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVVPGEG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=648361 OG912_RS24695 WP_327711281.1 5504054..5504737(-) (vraR) [Streptomyces sp. NBC_00464]
TTGACCATCCGTGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCAGGATTCGCGGCGCTGCTGGCGGCGCAGGCCGA
CATCGACGTGGTCGGTGAGGCCCCTGACGGCCGCCAGGGCGTCGACGTCAGCCGCCGCACCCATCCGGACGTGGTCCTGA
TGGATGTGCGGATGCCCGAGATGGACGGCCTGGCCGCGGCCCGCGAACTGCTGAACCCGCCGGTGGGCGTGGTGCACGTG
CCCAAGGTGCTGATGCTCACCACCTTCGACGTGGACGACTACGTGTACGAGGCGCTGCGCGTCGGCGCGTCCGGCTTCCT
GCTGAAGGACGCCCCGCCGGCCGACCTGATCTCGGCGGTCCGGGTGGTGGCGGCCGGTGACGCACTGCTGGCGCCGTCCG
TGACGCGGCGCCTGATCGCGGACTTCGCCCGGCAGCGGCCGTCGGGCACCACGCGCAGTGGGCCGGCGCTGCGGCTGAAC
GGGCTGACCCCGCGCGAGAAGGAGGTACTGGAACTGATCGCGCGAGGGCTGTCGAACCAGGAGATCGCGGGGCACCTGGT
GCTGGCGGAGCAGACGGTGAAGACCCACATCGGGCGGGTGCTGGCCAAGCTGGACCTGCGCGACCGCGCCCAGGCGGTGA
TCTTCGCGTACGAGGCGGGGCTGGTGGTGCCGGGCGAGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(162-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.286

98.678

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

37.991

100

0.383