Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG912_RS18515 Genome accession   NZ_CP107899
Coordinates   4101562..4102239 (+) Length   225 a.a.
NCBI ID   WP_327710322.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4096562..4107239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS18495 (OG912_18495) kynU 4097226..4098431 (+) 1206 WP_327710318.1 kynureninase -
  OG912_RS18500 (OG912_18500) - 4098546..4099178 (+) 633 WP_327710319.1 SUKH-4 family immunity protein -
  OG912_RS18505 (OG912_18505) - 4099277..4100152 (+) 876 WP_327710320.1 alpha/beta hydrolase -
  OG912_RS18510 (OG912_18510) - 4100261..4101565 (+) 1305 WP_327710321.1 histidine kinase -
  OG912_RS18515 (OG912_18515) vraR 4101562..4102239 (+) 678 WP_327710322.1 response regulator transcription factor Regulator
  OG912_RS18520 (OG912_18520) - 4102361..4103596 (+) 1236 WP_327710323.1 cytochrome P450 -
  OG912_RS18525 (OG912_18525) - 4103662..4105290 (-) 1629 WP_327710324.1 ABC transporter permease -
  OG912_RS18530 (OG912_18530) - 4105287..4106225 (-) 939 WP_327710325.1 ABC transporter ATP-binding protein -
  OG912_RS18535 (OG912_18535) - 4106352..4106891 (+) 540 WP_327710326.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23990.86 Da        Isoelectric Point: 4.9215

>NTDB_id=648342 OG912_RS18515 WP_327710322.1 4101562..4102239(+) (vraR) [Streptomyces sp. NBC_00464]
MTTPAAAPIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVNGRQAVAQVAALRPDVVLMDIRMPELNGIEATREIVAAD
ADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAAAPRPPALAQIG
DLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 678 bp        

>NTDB_id=648342 OG912_RS18515 WP_327710322.1 4101562..4102239(+) (vraR) [Streptomyces sp. NBC_00464]
ATGACCACGCCCGCCGCCGCGCCGATCCGGGTGCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCT
CCTCAACGCGATGCCGGGCATCGAGGTCGTCGGCGAGGCGGTCAACGGGCGCCAGGCCGTCGCCCAGGTCGCGGCGCTCC
GGCCCGACGTGGTGCTGATGGACATCCGGATGCCGGAGCTCAACGGCATCGAGGCGACCCGTGAGATCGTCGCCGCCGAC
GCGGATGCGAAGGTGCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTCTACCAGGCGCTGCGCGCCGGTGCTTCCGG
CTTCCTCCTCAAGGACGCCTCGGCCCGCCAACTCGCTGACGGTGTGCGCGTGGTGGCGTCCGGTGAGGCGCTTCTCGCCC
CCACGGTCACCCGGCGCCTGATCACGGAGTTCTCCAAGCTCGCGGCGGCCCCGCGGCCACCGGCTCTCGCCCAGATCGGC
GATCTCACGGAGCGCGAGACGGAGGTGCTCGTCCTGATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCTCGCACCTGGT
GGTCGCCGAGTCCACCATCAAGACCCATGTGAGCCGCATCCTGGTCAAGCTGGGCCTGCGCGACCGTACGCAGGCGGCCG
TCTTCGCCTACGAGGCCCGGCTGGTCACGCCGTCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-216)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

95.111

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

96.444

0.409