Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG912_RS14500 Genome accession   NZ_CP107899
Coordinates   3273077..3273715 (+) Length   212 a.a.
NCBI ID   WP_327709693.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3268077..3278715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS14480 (OG912_14475) - 3269234..3270364 (-) 1131 WP_327709688.1 hypothetical protein -
  OG912_RS14485 (OG912_14480) - 3270361..3271002 (-) 642 WP_327709689.1 ankyrin repeat domain-containing protein -
  OG912_RS14490 (OG912_14485) - 3271035..3271592 (-) 558 WP_327709690.1 heme-binding protein -
  OG912_RS14495 (OG912_14490) - 3271731..3273080 (+) 1350 WP_327709691.1 sensor histidine kinase -
  OG912_RS14500 (OG912_14495) vraR 3273077..3273715 (+) 639 WP_327709693.1 response regulator transcription factor Regulator
  OG912_RS14505 (OG912_14500) - 3273778..3274275 (+) 498 WP_327709694.1 hypothetical protein -
  OG912_RS14510 (OG912_14505) - 3274303..3275004 (-) 702 WP_327709695.1 pentapeptide repeat-containing protein -
  OG912_RS14515 (OG912_14510) - 3275144..3276145 (+) 1002 WP_327709696.1 zinc-binding dehydrogenase -
  OG912_RS14520 (OG912_14515) - 3276193..3276666 (-) 474 WP_327709697.1 GNAT family N-acetyltransferase -
  OG912_RS14525 (OG912_14520) - 3276698..3277618 (-) 921 WP_327709698.1 aminoglycoside phosphotransferase family protein -
  OG912_RS14530 (OG912_14525) - 3277652..3278326 (+) 675 WP_327713437.1 rhomboid-like protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22410.64 Da        Isoelectric Point: 5.1072

>NTDB_id=648335 OG912_RS14500 WP_327709693.1 3273077..3273715(+) (vraR) [Streptomyces sp. NBC_00464]
MTAAHPTVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALAARLTPDVVLMDLQLGAGIDGVEATRRIVAGT
DGAHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFTAIRSAAEGRTTLSPPVASRVMARMRTPQPTLTDRERDILG
QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 639 bp        

>NTDB_id=648335 OG912_RS14500 WP_327709693.1 3273077..3273715(+) (vraR) [Streptomyces sp. NBC_00464]
ATGACCGCCGCGCACCCGACCGTCCGCATCCTGCTCTGCGACGACCACGCGGTCGTACGCGCCGGACTCCTCGCCCTCCT
CGGCAGCGAACCCGACATCGAGGTCGTCGGCGAGGCAGGCAGCGGCGAGGAAGCCGTCGCCCTCGCCGCCAGGCTCACCC
CCGACGTCGTCCTGATGGACCTCCAGCTGGGCGCGGGCATCGACGGCGTGGAGGCGACCCGCCGCATCGTGGCCGGCACC
GACGGCGCCCACGTCCTCGTCCTCACCACGTACGACACCGACGCCGACATCACCCGCGCCATCGAAGCGGGCGCCACCGG
CTACCTGCTGAAGGCCGAACGCCCCGAGGAACTCTTCACCGCGATCCGCTCCGCCGCCGAGGGCCGCACCACCCTGTCCC
CGCCCGTCGCCAGCCGCGTCATGGCCCGCATGCGCACCCCGCAGCCCACCCTCACCGACCGCGAACGCGACATCCTGGGC
CAGCTCTCCCAGGGCCTGGGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAAGCCACCGTCAAGACCCACCTGGG
CCGCATCTACGACAAACTCGGCGTCGACACCCGCGCCGGCGCGGTCGCCGTGGCCAAGGAACAGCGGCTGCTGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-205)

Response regulator receiver domain (Response_reg)

(10-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.423

98.113

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

36.239

100

0.373