Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG210_RS30170 Genome accession   NZ_CP107896
Coordinates   6719519..6720184 (+) Length   221 a.a.
NCBI ID   WP_328323825.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6714519..6725184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS30150 (OG210_30140) - 6715686..6716450 (-) 765 WP_371539678.1 alpha/beta hydrolase -
  OG210_RS30155 (OG210_30145) - 6716761..6717210 (-) 450 WP_328323829.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG210_RS30160 (OG210_30150) - 6717340..6718038 (+) 699 WP_328323827.1 TetR/AcrR family transcriptional regulator -
  OG210_RS30165 (OG210_30155) - 6718098..6719522 (+) 1425 WP_371539683.1 sensor histidine kinase -
  OG210_RS30170 (OG210_30160) vraR 6719519..6720184 (+) 666 WP_328323825.1 response regulator transcription factor Regulator
  OG210_RS30175 (OG210_30165) - 6720299..6721534 (-) 1236 WP_328323824.1 MFS transporter -
  OG210_RS30180 (OG210_30170) - 6721622..6722836 (+) 1215 WP_328323823.1 ROK family protein -
  OG210_RS30185 (OG210_30175) - 6722943..6723707 (-) 765 WP_371539687.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23712.51 Da        Isoelectric Point: 4.7696

>NTDB_id=648301 OG210_RS30170 WP_328323825.1 6719519..6720184(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
MIRVLLADDQSLVRAGFRALLGAQPDIEVTGEAADGAEALALVRELRPDVVLMDIRMPLLDGLAATRKITADPEFDGVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAAVGLGGLTERER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=648301 OG210_RS30170 WP_328323825.1 6719519..6720184(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
GTGATCCGTGTCCTGCTCGCCGACGACCAGTCACTGGTCAGAGCCGGATTCCGGGCGCTGCTCGGGGCTCAGCCGGACAT
CGAGGTGACCGGCGAGGCCGCCGACGGCGCCGAGGCGCTCGCGCTGGTACGGGAACTGCGGCCCGACGTCGTGCTGATGG
ATATCCGGATGCCGCTGCTCGACGGCCTGGCCGCCACCCGGAAGATCACCGCCGACCCGGAGTTCGACGGGGTCAAGGTG
GTCATGCTCACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGAGCCTCCGGCTTCCTGGTCAAGGA
CACCGAGCCGGAGGAACTGCTGCGCGCGGTACGGGCGGTGGTCGACGGCGACGCGCTGCTCTCGCCGGGAGTGACGCGCA
GGCTCATCGCCGAGTTCGCCGCGCGTTCCAAGGAACCGGCCGCGGCCGTCGGCCTCGGCGGACTCACCGAACGCGAGCGG
GAGGTGATGGCCCTGGTCGGTATCGGCCTGTCCAACGACGAGATCGCCCGCAGACTGGTCGTCAGCCCGCTCACCGCCAA
GACCCACGTCAGCCGCGCCATGGTGAAACTCGGCGCCCGCGACCGGGCCCAACTCGTGGTCCTGGCGTACGAGTCGGGGC
TGGTGCGCCCCGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.889

97.738

0.38
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.371