Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG210_RS29300 Genome accession   NZ_CP107896
Coordinates   6530525..6531175 (-) Length   216 a.a.
NCBI ID   WP_371539537.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6525525..6536175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS29280 (OG210_29270) - 6525953..6526783 (-) 831 WP_371539533.1 alpha/beta fold hydrolase -
  OG210_RS29285 (OG210_29275) - 6526992..6527876 (+) 885 WP_328324140.1 RNA polymerase sigma-70 factor -
  OG210_RS29290 (OG210_29280) - 6528259..6529026 (+) 768 WP_328324138.1 GntR family transcriptional regulator -
  OG210_RS29295 (OG210_29285) - 6529277..6530437 (-) 1161 WP_328324136.1 ROK family protein -
  OG210_RS29300 (OG210_29290) vraR 6530525..6531175 (-) 651 WP_371539537.1 response regulator Regulator
  OG210_RS29305 (OG210_29295) - 6531180..6532304 (-) 1125 WP_328335320.1 histidine kinase -
  OG210_RS29310 (OG210_29300) - 6532413..6533345 (+) 933 WP_371539539.1 ATP-binding cassette domain-containing protein -
  OG210_RS29315 (OG210_29305) - 6533349..6534092 (+) 744 WP_328324130.1 ABC transporter permease -
  OG210_RS29320 (OG210_29310) - 6534138..6534581 (+) 444 WP_328324128.1 hypothetical protein -
  OG210_RS29325 (OG210_29315) mug 6534741..6535316 (-) 576 WP_328324126.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22813.51 Da        Isoelectric Point: 5.8400

>NTDB_id=648299 OG210_RS29300 WP_371539537.1 6530525..6531175(-) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
MPISVLLVDDEPLVRAGLRAVLEAQGDIQVVGEAADGAAVVPLVRQLRPDVVAMDVRMPLLDGIAATQAVLRTVQPPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRALAAEYGNKAARQALDRAALTEREAAV
LRLMARGLSNAEIAAQLIIGAETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=648299 OG210_RS29300 WP_371539537.1 6530525..6531175(-) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
GTGCCGATCTCTGTGCTGCTTGTCGACGACGAACCTCTCGTACGTGCCGGCTTGCGCGCCGTACTTGAGGCCCAGGGCGA
CATTCAGGTGGTGGGCGAGGCCGCTGACGGTGCGGCCGTGGTGCCGCTGGTGCGCCAGTTGCGCCCCGACGTGGTGGCGA
TGGATGTGCGGATGCCCCTGCTGGACGGCATCGCGGCCACCCAAGCAGTGCTGCGGACCGTTCAGCCGCCGCCGAAGATC
CTGGTCGTGACGACTTTCGAGAACGACGAGTACGTCTATCAGGCGCTGCGCGCGGGTGCGGACGGGTTCCTGCTGAAGCG
GGCCCGGCCGGCCGAGATCGTCCACGCGGTGCGGTTGGTCGCCGAGGGAGAGTCGCTGCTCTTCCCAGCAGCGGTTCGAG
CGCTCGCCGCCGAGTACGGGAACAAGGCTGCGCGACAAGCGCTGGACCGGGCGGCTCTCACCGAACGGGAAGCCGCAGTG
CTCCGGCTGATGGCACGCGGCCTGTCGAACGCCGAGATCGCGGCGCAGCTGATCATCGGCGCCGAGACGGTGAAGTCCCA
CGTCAGCGCGGTGCTGGCGAAGCTGGGGGCTCGCGACCGTACTCAAGCGGTGATTGCCGCATACGAGTCGGGGTTCGTCG
CGCCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.845

98.611

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.366