Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG210_RS25985 Genome accession   NZ_CP107896
Coordinates   5779488..5780147 (+) Length   219 a.a.
NCBI ID   WP_328325225.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5774488..5785147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS25965 (OG210_25940) - 5775361..5776098 (-) 738 WP_328325235.1 transglycosylase SLT domain-containing protein -
  OG210_RS25970 (OG210_25945) - 5776361..5777458 (-) 1098 WP_371538903.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG210_RS25975 (OG210_25950) - 5777455..5778153 (-) 699 WP_328325230.1 SDR family oxidoreductase -
  OG210_RS25980 (OG210_25955) - 5778344..5779495 (+) 1152 WP_328325228.1 GAF domain-containing sensor histidine kinase -
  OG210_RS25985 (OG210_25960) vraR 5779488..5780147 (+) 660 WP_328325225.1 response regulator transcription factor Regulator
  OG210_RS25990 (OG210_25965) - 5780281..5780520 (+) 240 WP_328325223.1 chaplin -
  OG210_RS25995 (OG210_25970) - 5780613..5781401 (-) 789 WP_328325221.1 hypothetical protein -
  OG210_RS26000 (OG210_25975) - 5781524..5782321 (+) 798 WP_164267483.1 ABC transporter ATP-binding protein -
  OG210_RS26005 (OG210_25980) - 5782381..5782809 (+) 429 WP_371538908.1 NfeD family protein -
  OG210_RS26010 (OG210_25985) - 5782922..5783863 (+) 942 WP_266858387.1 SPFH domain-containing protein -
  OG210_RS26015 (OG210_25990) - 5784012..5784515 (-) 504 WP_328325218.1 HNH endonuclease -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23529.94 Da        Isoelectric Point: 5.3956

>NTDB_id=648295 OG210_RS25985 WP_328325225.1 5779488..5780147(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
MADTAPRPKAAIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAPDGEQGVAAAEELRPDIVLMDIKMPGMDGIEALRRLR
ELANPARVLVVTSFTEQRTVVPALRAGASGYVYKDVDPEALADAIRSVHAGHVLLQPEVAGALLSQEPGGGQGRGTALTE
REREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRNGAAG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=648295 OG210_RS25985 WP_328325225.1 5779488..5780147(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
GTGGCTGACACCGCGCCCCGGCCGAAGGCGGCCATCCGCGTCCTGCTCGTCGACGACCACCAGGTCGTCAGGCGGGGCCT
GCGCACCTTTCTGGAGATCCAGGACGACATCGAGGTCGTGGGCGAGGCACCGGACGGGGAGCAGGGGGTGGCCGCCGCAG
AGGAGCTGCGCCCCGACATCGTCCTGATGGACATCAAGATGCCGGGTATGGACGGCATCGAGGCGCTGCGCAGGCTCAGG
GAGCTGGCCAATCCGGCCCGAGTGCTGGTGGTCACCAGCTTCACCGAGCAGCGGACCGTGGTTCCCGCCCTGCGCGCGGG
TGCGTCGGGCTATGTGTACAAGGACGTCGACCCGGAGGCGCTGGCCGACGCGATCCGCTCCGTCCACGCCGGGCACGTTC
TGCTCCAGCCCGAAGTGGCCGGGGCTCTCCTCTCCCAGGAGCCCGGCGGCGGCCAGGGGAGGGGCACCGCGCTCACCGAG
CGGGAACGCGAGGTGCTCGGGCTGATCGCCGACGGACGCTCCAACCGGGAGATCGCGCGGGCGCTGGTCCTCTCCGAGAA
GACCGTCAAGACGCATGTGTCGAACATCCTGATGAAACTGGACCTCGCCGACCGGACCCAGGCGGCGCTCTGGGCGGTAC
GGAACGGGGCGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-126)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.66

94.064

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.379