Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG210_RS01195 Genome accession   NZ_CP107896
Coordinates   268555..269223 (+) Length   222 a.a.
NCBI ID   WP_371534812.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 263555..274223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS01170 (OG210_01170) - 263557..264327 (+) 771 WP_328333562.1 MBL fold metallo-hydrolase -
  OG210_RS01175 (OG210_01175) - 264324..264956 (+) 633 WP_328333560.1 DedA family protein -
  OG210_RS01180 (OG210_01180) - 265128..266096 (+) 969 WP_328333558.1 alpha/beta hydrolase -
  OG210_RS01185 (OG210_01185) - 266089..267255 (+) 1167 WP_371534810.1 acyltransferase -
  OG210_RS01190 (OG210_01190) - 267248..268558 (+) 1311 WP_371540123.1 sensor histidine kinase -
  OG210_RS01195 (OG210_01195) vraR 268555..269223 (+) 669 WP_371534812.1 response regulator Regulator
  OG210_RS01200 (OG210_01200) - 269254..270399 (-) 1146 WP_328333550.1 MBL fold metallo-hydrolase -
  OG210_RS01205 (OG210_01205) - 270431..271648 (-) 1218 WP_328333548.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  OG210_RS01210 (OG210_01210) - 271943..273448 (+) 1506 WP_328333546.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23623.26 Da        Isoelectric Point: 4.8121

>NTDB_id=648237 OG210_RS01195 WP_371534812.1 268555..269223(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
MTIRVLIADDQMMVRQGFTVLLNAEPDIEVVGQAVDGLDAIARVAELAPDVVLMDIRMPELGGIEATRRITGPGGAAVRV
LVLTTFDLDEYVYEALRAGAAGFLLKDASADELARAVRVVAAGDALLAPNITKRLIAEFSRVTSSARTAPKGRAGDLTER
ETEVLSLIAQGLSNAEIAGQLVVAEQTVKTHVSRILVKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 669 bp        

>NTDB_id=648237 OG210_RS01195 WP_371534812.1 268555..269223(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
ATGACCATCCGGGTGCTGATCGCCGACGACCAGATGATGGTCCGTCAGGGTTTCACGGTGCTGCTCAACGCGGAGCCGGA
CATCGAAGTCGTCGGCCAGGCGGTCGACGGGCTCGACGCCATCGCCCGGGTCGCCGAACTCGCCCCGGACGTCGTCCTGA
TGGACATCCGGATGCCCGAACTCGGCGGTATCGAGGCCACCCGCCGGATCACCGGGCCCGGCGGTGCGGCCGTGCGGGTC
CTGGTGCTGACGACCTTCGACCTGGACGAGTACGTGTACGAGGCGCTCCGCGCGGGCGCGGCGGGCTTCCTCCTGAAGGA
CGCGTCGGCGGACGAACTCGCCCGCGCGGTAAGGGTGGTGGCGGCCGGTGACGCGCTGCTCGCCCCGAACATCACCAAAC
GCCTCATCGCCGAGTTCTCCCGGGTGACCAGCTCCGCCCGCACCGCGCCGAAGGGCCGGGCCGGCGATCTGACCGAGCGC
GAGACCGAGGTCCTCTCCCTCATCGCCCAGGGGCTTTCCAACGCGGAGATCGCCGGGCAGCTGGTGGTGGCGGAGCAGAC
CGTGAAGACCCATGTGAGCCGGATCCTGGTCAAGCTGGGGCTGCGCGACCGGACCCAGGCCGCGGTCTTCGCGTACGAGA
CGGGCCTGGTGCGCCCGGCCGGATACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.986

99.55

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

41.518

100

0.419