Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS31120 Genome accession   NZ_CP107894
Coordinates   6860428..6861093 (+) Length   221 a.a.
NCBI ID   WP_327685457.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6855428..6866093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS31100 (OG803_31135) - 6856157..6857425 (+) 1269 WP_327685453.1 geranylgeranyl reductase family protein -
  OG803_RS31105 (OG803_31140) - 6857686..6858135 (-) 450 WP_327685454.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG803_RS31110 (OG803_31145) - 6858320..6859036 (+) 717 WP_327685455.1 TetR/AcrR family transcriptional regulator -
  OG803_RS31115 (OG803_31150) - 6859187..6860431 (+) 1245 WP_327685456.1 sensor histidine kinase -
  OG803_RS31120 (OG803_31155) vraR 6860428..6861093 (+) 666 WP_327685457.1 response regulator transcription factor Regulator
  OG803_RS31125 (OG803_31160) - 6861054..6861338 (-) 285 WP_327685458.1 DUF6332 family protein -
  OG803_RS31130 (OG803_31165) - 6861510..6862985 (-) 1476 WP_327685459.1 MFS transporter -
  OG803_RS31135 (OG803_31170) - 6863072..6863473 (+) 402 WP_313947767.1 MarR family transcriptional regulator -
  OG803_RS31140 (OG803_31175) - 6863611..6864354 (-) 744 WP_327685460.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG803_RS31145 (OG803_31180) - 6864477..6865697 (-) 1221 WP_327685461.1 MFS transporter -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24105.91 Da        Isoelectric Point: 4.8184

>NTDB_id=648222 OG803_RS31120 WP_327685457.1 6860428..6861093(+) (vraR) [Streptomyces sp. NBC_00467]
MIRVLLADDQLLVRAGFRALLDAQQDIEVAGEAADGEEAVRLVRELAPDVVLMDIRMPLLDGLAATRRITGDERLHDVKV
VMLTTFELDEYVFEAIRAGASGFLVKDTEPDELLRAVRAVVAGDALLSPGVTRRLIAEFAARSKEPKSAEGLGELTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=648222 OG803_RS31120 WP_327685457.1 6860428..6861093(+) (vraR) [Streptomyces sp. NBC_00467]
GTGATCCGCGTACTGCTCGCCGATGACCAGCTGTTGGTCCGAGCCGGGTTCAGGGCCCTGCTGGACGCCCAGCAGGACAT
CGAGGTGGCCGGTGAGGCCGCCGACGGCGAGGAGGCGGTGCGGCTGGTGCGCGAACTGGCCCCGGATGTCGTGCTGATGG
ACATCCGGATGCCCCTGCTCGACGGGCTCGCGGCCACTCGCCGGATCACCGGAGACGAGCGGCTCCACGACGTGAAGGTC
GTCATGCTGACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCGCCGGTGCCTCGGGCTTTCTGGTGAAGGA
CACCGAACCGGATGAACTGCTGCGCGCGGTACGGGCGGTGGTGGCCGGCGACGCCCTGCTGTCGCCCGGGGTGACGCGGC
GGCTGATCGCGGAGTTCGCGGCCCGTTCCAAGGAGCCGAAGTCCGCGGAGGGCCTCGGTGAACTCACCGAGCGTGAACGC
GAGGTGATGGCCCTGGTCGGTATCGGCCTGTCGAACGAGGAGATCGCGCGCCGACTGGTCGTCAGTCCTCTGACGGCCAA
GACGCACGTCAGCCGCACGATGGTGAAGCTGGGGGCCCGCGACCGGGCCCAACTCGTCGTCCTGGCCTATGAGTCGGGGT
TGGTGCGGCCCGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.535

97.285

0.385
  degU Bacillus subtilis subsp. subtilis str. 168

36.444

100

0.371