Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   L2O48_RS01235 Genome accession   NZ_CP091185
Coordinates   267177..270539 (-) Length   1120 a.a.
NCBI ID   WP_013856355.1    Uniprot ID   -
Organism   Vibrio anguillarum strain J382     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 262177..275539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2O48_RS01215 (L2O48_01215) - 263105..263533 (+) 429 WP_013856359.1 HIT domain-containing protein -
  L2O48_RS01220 (L2O48_01220) - 263646..263876 (-) 231 WP_013856358.1 FeoC-like transcriptional regulator -
  L2O48_RS01225 (L2O48_01225) feoB 263873..266146 (-) 2274 WP_013856357.1 Fe(2+) transporter permease subunit FeoB -
  L2O48_RS01230 (L2O48_01230) - 266146..266373 (-) 228 WP_013856356.1 FeoA family protein -
  L2O48_RS01235 (L2O48_01235) tfoS 267177..270539 (-) 3363 WP_013856355.1 AraC family transcriptional regulator Regulator
  L2O48_RS01240 (L2O48_01240) znuA 270712..271575 (-) 864 WP_228376499.1 zinc ABC transporter substrate-binding protein ZnuA -
  L2O48_RS01245 (L2O48_01245) znuC 271675..272457 (+) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  L2O48_RS01250 (L2O48_01250) znuB 272450..273229 (+) 780 WP_013856353.1 zinc ABC transporter permease subunit ZnuB -
  L2O48_RS01255 (L2O48_01255) sucD 273307..274179 (-) 873 WP_013856352.1 succinate--CoA ligase subunit alpha -
  L2O48_RS01260 (L2O48_01260) sucC 274179..275345 (-) 1167 WP_013856351.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127942.70 Da        Isoelectric Point: 6.8288

>NTDB_id=648207 L2O48_RS01235 WP_013856355.1 267177..270539(-) (tfoS) [Vibrio anguillarum strain J382]
MKGKNDYFKPLLWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGTLNGGLIIDVED
PKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGIRY
FSLFGQKFKRHSIAQLNNNPITKIVTRSDNKGYFFLTRQGLYQVDAEDWQEPKLIFPGEVHDVAQIDDHSLWIATHTGIV
IYHLQTKKMIETSVLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYQLADNSLTDFGSEWFVDAFLPAKIIKLKSTRRGV
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEMVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRALSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPNPQNS
MINSLSFVVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVEQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNHYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=648207 L2O48_RS01235 WP_013856355.1 267177..270539(-) (tfoS) [Vibrio anguillarum strain J382]
TTGAAAGGAAAGAACGACTATTTTAAACCTTTGCTCTGGATCTTGGGTTTTCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGGAAAATTTTTGCCGCACAAAATTTGT
TTTTAGGTGAAGAAGGGGGAATTTGGATACACGATGTGCATGGCAAAGTGGTTTTCTTTGATGGACAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGTT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGCAGAGAACTTGTGATTGGAACGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAATATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAATAATGGGT
TACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAAGGTGGGATTTGGATCGCAACGGATAAAGGTATTCGTTAC
TTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACAGCTCAACAATAATCCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGGTATTTTTTTTTAACTCGACAAGGGTTGTACCAAGTCGATGCTGAAGATTGGCAAGAGCCTAAAC
TTATTTTCCCTGGAGAAGTGCATGATGTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATCGTT
ATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCGTTTTACCTCTGAAGCTGCGTTCGAATGATACTAAACATCT
TGAATTTGATCATGAAGGACTGTTGTGGGGAGCAACAGGTAACCATTTGTGGTCATATCAGTTGGCCGATAACTCGCTAA
CCGATTTCGGTTCTGAATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGGTA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGCGATGTTTGGTTTGCTAGTGCTTATGGCGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGATGGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGTTTTG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACCAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGTCGTGGTCGTTTTCAGACACTAGAACTGGAATATGGAAGTTCGATAAGCTTTTTGTT
TGGTGCATTGCCAGAATCGAGAGCCTTATCATTGGAGTATCGTATTGCAGGGGATAAGGAGTGGCAGAGATTAGAAAGCG
CTCAGTTGACACTTGATCACCTATTACCTGGACACTATCGTTTGCTAGTGAGAAATTACAGTCCAAATCCGCAAAACAGT
ATGATAAACAGTCTATCATTTGTTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGAACAGATGTTAGATTCTATTACTCCTACATTAAATCAGCTGATTTATCGCTCCCAACTCCATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAACGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGACCTATCGATAATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTACAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATGATTGACTGTGGCGATCAGGTGCAGTCTATCAATAGTGATAAGCGTATCTCTGGTTTTGAACTAGAGGAA
ATGCAACTGTTAGTACAGCGCAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAGGAGCATTCAGAGGACAAGTTTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTCGAAAAATTGGTACACAATCACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCCAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGCTTAGAGAAAGCGTGCCAATATTTGCTCGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.157

100

0.495