Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS16435 Genome accession   NZ_CP107894
Coordinates   3583721..3584380 (-) Length   219 a.a.
NCBI ID   WP_313945080.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3578721..3589380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS16415 (OG803_16430) - 3579201..3579707 (-) 507 WP_327681982.1 MarR family transcriptional regulator -
  OG803_RS16420 (OG803_16435) - 3579801..3580700 (+) 900 WP_327681984.1 ABC transporter ATP-binding protein -
  OG803_RS16425 (OG803_16440) - 3580697..3582313 (+) 1617 WP_327681986.1 ABC transporter permease -
  OG803_RS16430 (OG803_16445) - 3582419..3583624 (-) 1206 WP_327686803.1 cytochrome P450 -
  OG803_RS16435 (OG803_16450) vraR 3583721..3584380 (-) 660 WP_313945080.1 response regulator transcription factor Regulator
  OG803_RS16440 (OG803_16455) - 3584377..3585657 (-) 1281 WP_327686804.1 histidine kinase -
  OG803_RS16445 (OG803_16460) - 3585843..3586670 (-) 828 WP_327681988.1 NAD(P)H-binding protein -
  OG803_RS16450 (OG803_16465) - 3586799..3587668 (-) 870 WP_327681990.1 alpha/beta hydrolase -
  OG803_RS16455 (OG803_16470) kynU 3587869..3589062 (-) 1194 WP_327681992.1 kynureninase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23627.33 Da        Isoelectric Point: 4.8330

>NTDB_id=648189 OG803_RS16435 WP_313945080.1 3583721..3584380(-) (vraR) [Streptomyces sp. NBC_00467]
MTIRVLVVDDQVMVREGFSVLLNAMPDIEVIGEAVNGREAVSKVAELAPDVVLMDIRMPELNGIEATREIVASHAESKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSKISQTPKPPALSQVGELTERE
TEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 660 bp        

>NTDB_id=648189 OG803_RS16435 WP_313945080.1 3583721..3584380(-) (vraR) [Streptomyces sp. NBC_00467]
ATGACCATCCGGGTCCTTGTCGTCGACGACCAGGTCATGGTCCGTGAAGGCTTCTCCGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTGATCGGCGAGGCGGTGAACGGCCGCGAGGCGGTCTCCAAGGTCGCCGAGCTGGCGCCGGACGTGGTCCTGA
TGGACATCCGTATGCCGGAGCTGAACGGCATCGAGGCCACCCGCGAGATCGTCGCCTCGCACGCGGAGTCGAAGGTGCTG
GTGCTGACCACCTTCGATCTGGACGAGTACGTCTACCAGGCGCTGCGGGCCGGGGCGTCGGGCTTTCTGCTCAAGGACGC
CTCCGCGCGTCAACTGGCCGACGGGGTACGGGTCGTGGCGGCCGGCGAGGCCCTGCTCGCGCCGACCGTGACGCGACGGC
TGATCACGGAGTTCTCCAAGATCAGCCAGACCCCGAAGCCGCCGGCCCTCTCCCAGGTCGGTGAGCTCACCGAGCGCGAG
ACCGAGGTGCTGGTGCTCATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCTCCCATCTGGTGGTCGCCGAGTCCACGAT
CAAGACGCATGTGAGCCGCGTCCTGGTGAAGCTCGGCCTGCGGGATCGCACCCAGGCGGCGGTGTTCGCGTACGAGGCGA
GGCTGGTCACACCCTCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

98.63

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

99.087

0.411