Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG803_RS16310 Genome accession   NZ_CP107894
Coordinates   3557745..3558344 (-) Length   199 a.a.
NCBI ID   WP_313945053.1    Uniprot ID   A0ACC6PYE6
Organism   Streptomyces sp. NBC_00467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3552745..3563344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS16290 (OG803_16305) - 3553528..3554190 (-) 663 WP_313945049.1 SigE family RNA polymerase sigma factor -
  OG803_RS16295 (OG803_16310) - 3554444..3555544 (-) 1101 WP_327681950.1 aspartate-semialdehyde dehydrogenase -
  OG803_RS16300 (OG803_16315) - 3555541..3556812 (-) 1272 WP_313945051.1 aspartate kinase -
  OG803_RS16305 (OG803_16320) - 3557093..3557752 (-) 660 WP_313945052.1 DUF5063 domain-containing protein -
  OG803_RS16310 (OG803_16325) recR 3557745..3558344 (-) 600 WP_313945053.1 recombination mediator RecR Machinery gene
  OG803_RS16315 (OG803_16330) - 3558399..3558734 (-) 336 WP_313948929.1 YbaB/EbfC family nucleoid-associated protein -
  OG803_RS16320 (OG803_16335) - 3559022..3559762 (+) 741 WP_327681953.1 SLATT domain-containing protein -
  OG803_RS16325 (OG803_16340) - 3560380..3561327 (-) 948 WP_327681955.1 class I SAM-dependent methyltransferase -
  OG803_RS16330 (OG803_16345) - 3561441..3562091 (-) 651 WP_313945056.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21913.28 Da        Isoelectric Point: 5.1558

>NTDB_id=648188 OG803_RS16310 WP_313945053.1 3557745..3558344(-) (recR) [Streptomyces sp. NBC_00467]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTITELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648188 OG803_RS16310 WP_313945053.1 3557745..3558344(-) (recR) [Streptomyces sp. NBC_00467]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCAGAACCGACCGATGTCCGCCGCCTCGCGCACGCACTGCTCGAGGTGAAGGACAAGGTCC
GCTTCTGTGCGGTGTGCGGCAACGTCGCACAGCAGGAGCAGTGCAACATCTGCCGCGACCCGCGCCGTGACCTGTCGGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGCTATCACGTACTCGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATCCGTGAGCTGCTGACCCGCCTGGCGGACGGCA
CGATCACCGAGCTGATCCTGGCCACGGACCCCAATCTGGAGGGCGAGGCCACCGCCACGTATCTGGCGCGCATGATCAAG
CCGATGGGCCTGAAGGTCACCCGGCTGGCCAGTGGTCTGCCCGTGGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
GGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462