Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L1776_RS09120 Genome accession   NZ_CP091174
Coordinates   1965116..1967341 (+) Length   741 a.a.
NCBI ID   WP_236451576.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain XX1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1960116..1972341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS09090 - 1960266..1960574 (-) 309 WP_011913753.1 hypothetical protein -
  L1776_RS09095 - 1960578..1961213 (-) 636 WP_236451575.1 PilZ domain-containing protein -
  L1776_RS09100 - 1961246..1962493 (+) 1248 WP_020307157.1 lipoprotein-releasing ABC transporter permease subunit -
  L1776_RS09105 lolD 1962501..1963199 (+) 699 WP_013983263.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  L1776_RS09110 - 1963199..1964443 (+) 1245 WP_125920735.1 lipoprotein-releasing ABC transporter permease subunit -
  L1776_RS09115 - 1964456..1964971 (-) 516 WP_011913748.1 DUF2062 domain-containing protein -
  L1776_RS09120 comA 1965116..1967341 (+) 2226 WP_236451576.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1776_RS09125 - 1967413..1968045 (+) 633 WP_013983260.1 MotA/TolQ/ExbB proton channel family protein -
  L1776_RS09130 - 1968042..1968470 (+) 429 WP_013983259.1 ExbD/TolR family protein -
  L1776_RS09135 lpxK 1968470..1969474 (+) 1005 WP_236451577.1 tetraacyldisaccharide 4'-kinase -
  L1776_RS09140 - 1969520..1969705 (+) 186 WP_011913743.1 Trm112 family protein -
  L1776_RS09145 kdsB 1969702..1970466 (+) 765 WP_049339268.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L1776_RS09150 - 1970468..1970935 (+) 468 WP_230484188.1 low molecular weight protein-tyrosine-phosphatase -
  L1776_RS09155 murB 1970932..1971951 (+) 1020 WP_196111231.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 81145.75 Da        Isoelectric Point: 10.1734

>NTDB_id=648154 L1776_RS09120 WP_236451576.1 1965116..1967341(+) (comA) [Stutzerimonas stutzeri strain XX1]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRHRWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWLE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPQLQAGERWRLAARLKRPHGMVNPHAFDYEAWLLARRIGAT
GTIKAGERLTASTASDGWRDQLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFDVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWMALTRAQWAATLGLLPLLLALGLPVSASGPLANLLAVPWVSLTVPF
ALLGTLLLPLAGVGEALLSVVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGLLLLLP
LVFPPRVEVPDGRAQVWVLDVGQGLAVLVRTREYALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GAHAVQRLLRVDRVVSGEPSRLAPDLGAEHCESGRSWQWNDVRFSLWQWQMARDSNQQSCVLQIEANGERILLTGDIDQA
AERAWLASEQRTPSHWLLLPHHGSRSSSSEPFLRGVASHAALISRSLHNAFGHPHPSVVERLETLDIRAYDTALHGAIRI
ELGSFSPPRLQRSQRRFWREK

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=648154 L1776_RS09120 WP_236451576.1 1965116..1967341(+) (comA) [Stutzerimonas stutzeri strain XX1]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGCCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
CGCGGCGCTGGCGGCTGTCGGCCTGCTGCTCCTGCTGCGTCACCGCTGGGTGGCGCCGGGCTTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTGCCGGCGTCCATGGACGGTCGCACGTTCTGGCTCGAG
GGGCGGGTAGTGGGGTTGCCCAGTCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCAGCTACAAGCCGGCGAGCGCTGGCGCCTGGCGGCGCGAC
TGAAGCGACCCCATGGCATGGTCAATCCCCACGCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGCATCGGCGCCACG
GGCACGATAAAGGCGGGCGAGCGCCTGACGGCGTCGACGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGTTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGACAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGGGCGTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGATGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGATTGCGCTTTCGCCATCTGGGTGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCTCTGGTGACATTGCAGCCGGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGCTCATGGCGCTGGTGGATGGCCCTGACCCGGGCGCAGTGGGCGGCCACCCTTGGTCTGCTTCCGCTGTTGCTGG
CCCTCGGATTGCCGGTAAGTGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTGACCGTGCCCTTT
GCGTTGCTCGGTACGCTCCTGCTGCCCCTGGCCGGGGTTGGCGAAGCGCTGCTGTCGGTGGTCGGCTATTCGCTGGCATT
GCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCAGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTATTGCCG
CTGGTATTCCCGCCTCGTGTGGAGGTGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTCGGGCAGGGCCTGGCGGT
GCTTGTACGCACTCGCGAGTATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGCGGGTGG
TCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTGAGTCATGCCGATAATGATCATTCGGGC
GGTGCGCACGCGGTTCAGCGGTTGCTGAGGGTTGATCGGGTGGTCAGTGGCGAGCCGTCGCGCCTTGCGCCTGATCTGGG
CGCCGAACATTGCGAAAGCGGTCGCAGCTGGCAGTGGAACGATGTGCGCTTCAGTCTGTGGCAATGGCAGATGGCACGCG
ACAGCAATCAGCAGTCCTGCGTGCTGCAAATCGAGGCCAATGGTGAGCGGATCCTGCTCACCGGCGACATCGACCAGGCC
GCGGAGCGGGCATGGCTGGCAAGCGAACAGCGCACCCCATCGCACTGGCTGTTGCTGCCCCACCATGGCAGCCGCAGCTC
GTCGTCAGAACCGTTTCTGCGCGGTGTCGCCTCCCATGCCGCGCTGATCTCGCGCAGCCTGCACAATGCCTTCGGCCACC
CACACCCAAGCGTGGTCGAGCGGCTCGAGACCCTTGACATCCGGGCCTACGACACCGCCTTGCATGGCGCAATCCGCATA
GAGCTGGGAAGCTTTTCGCCTCCTCGGCTACAACGTTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-673)

Domain of unknown function (DUF4131) (DUF4131)

(23-168)

Competence protein (Competence)

(201-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

67.087

96.356

0.646
  comA Ralstonia pseudosolanacearum GMI1000

36.632

100

0.385