Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS05595 Genome accession   NZ_CP107894
Coordinates   1212227..1212898 (+) Length   223 a.a.
NCBI ID   WP_327678511.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207227..1217898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS05575 (OG803_05585) - 1207679..1208563 (+) 885 WP_327678503.1 hypothetical protein -
  OG803_RS05580 (OG803_05590) - 1208752..1209711 (+) 960 WP_327678505.1 alpha/beta hydrolase -
  OG803_RS05585 (OG803_05595) - 1209704..1210882 (+) 1179 WP_327678507.1 acyltransferase -
  OG803_RS05590 (OG803_05600) - 1210875..1212230 (+) 1356 WP_327678509.1 histidine kinase -
  OG803_RS05595 (OG803_05605) vraR 1212227..1212898 (+) 672 WP_327678511.1 response regulator transcription factor Regulator
  OG803_RS05600 (OG803_05610) - 1213321..1213935 (+) 615 WP_327686692.1 dihydrofolate reductase family protein -
  OG803_RS05605 (OG803_05615) - 1214064..1214450 (-) 387 WP_327678513.1 hypothetical protein -
  OG803_RS05610 (OG803_05620) - 1214467..1214952 (-) 486 WP_327678515.1 isochorismatase family protein -
  OG803_RS05615 (OG803_05625) - 1215084..1215512 (-) 429 WP_327678517.1 hypothetical protein -
  OG803_RS05620 (OG803_05630) - 1215509..1215922 (-) 414 WP_327678519.1 hypothetical protein -
  OG803_RS05625 (OG803_05635) - 1216054..1217058 (+) 1005 WP_327678521.1 helix-turn-helix domain-containing protein -
  OG803_RS05630 (OG803_05640) - 1217213..1217695 (+) 483 WP_327678523.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23710.53 Da        Isoelectric Point: 5.0973

>NTDB_id=648154 OG803_RS05595 WP_327678511.1 1212227..1212898(+) (vraR) [Streptomyces sp. NBC_00467]
MTIRVLIADDQMMVRQGFTVLLNAEPGIEVVGQAVDGLDAIAKVAELTPDVVLMDIRMPGLGGIEATGRITGPAGDPAVK
VLVLTTFDLDEYVYEALRAGASGFLLKDASAAELAQAVRVVAAGDALLAPNITKRLIAEFSRVTRTHHAPLMERVGALTE
RETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVYAYETGVVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=648154 OG803_RS05595 WP_327678511.1 1212227..1212898(+) (vraR) [Streptomyces sp. NBC_00467]
ATGACCATCCGCGTGCTGATCGCGGACGACCAGATGATGGTGCGCCAGGGCTTCACCGTGCTGCTGAACGCCGAGCCGGG
CATCGAGGTCGTCGGCCAAGCCGTGGACGGCCTCGACGCGATCGCCAAAGTGGCCGAACTGACCCCCGACGTCGTCCTGA
TGGACATCCGTATGCCGGGACTGGGCGGGATCGAGGCCACAGGCCGCATCACCGGACCCGCCGGCGACCCGGCCGTGAAG
GTGCTGGTCCTCACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCCTCCGGCTTTCTGCTCAA
GGACGCGTCGGCCGCCGAGCTGGCGCAGGCGGTACGGGTGGTGGCGGCAGGTGACGCGCTGCTCGCACCGAACATCACGA
AGCGGCTGATCGCCGAGTTCTCGCGGGTGACCCGCACCCACCACGCTCCGCTCATGGAGCGCGTCGGAGCCCTGACGGAA
CGCGAGACCGAGGTCCTGGCCCTGATCGCGCAAGGGCTGTCGAACGCCGAGATCGCGACGCGACTGGTCGTGGCGGAGCA
GACGGTGAAGACGCATGTCGGCCGGATCCTGCTGAAGCTGGGTCTGCGCGATCGTACGCAGGCGGCGGTGTACGCGTACG
AAACGGGCGTCGTCCGCCCCGCCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.292

98.206

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.413