NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	L2M54_RS18800	Genome accession	NZ_CP091173
Coordinates	339081..339941 (-)	Length	286 a.a.
NCBI ID	WP_001152273.1	Uniprot ID	A0A836M4G0
Organism	Acinetobacter baumannii strain AB5116
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 334081..344941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2M54_RS01580 (L2M54_01580)	-	334972..336282 (+)	1311	WP_005129836.1	tetratricopeptide repeat protein	-
L2M54_RS01585 (L2M54_01585)	-	336359..336685 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
L2M54_RS01590 (L2M54_01590)	rlmB	336787..337536 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
L2M54_RS01595 (L2M54_01595)	-	337572..338486 (+)	915	WP_033917815.1	DMT family transporter	-
L2M54_RS01600 (L2M54_01600)	coaE	338483..339079 (-)	597	WP_005129834.1	dephospho-CoA kinase	-
L2M54_RS18800	pilD	339081..339941 (-)	861	WP_001152273.1	A24 family peptidase	Machinery gene
L2M54_RS01615 (L2M54_01615)	pilC	339941..341167 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
L2M54_RS01620 (L2M54_01620)	pilB	341197..342909 (-)	1713	WP_001274984.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L2M54_RS01625 (L2M54_01625)	tpiA	343200..343994 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
L2M54_RS01630 (L2M54_01630)	secG	344007..344336 (+)	330	WP_005129832.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32088.53 Da Isoelectric Point: 7.1041

                                >NTDB_id=648141 L2M54_RS18800 WP_001152273.1 339081..339941(-) (pilD) [Acinetobacter baumannii strain AB5116]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=648141 L2M54_RS18800 WP_001152273.1 339081..339941(-) (pilD) [Acinetobacter baumannii strain AB5116]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0648141