Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHV16_RS42525 Genome accession   NZ_CP107889
Coordinates   9335257..9335916 (+) Length   219 a.a.
NCBI ID   WP_327659658.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9330257..9340916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS42505 (OHV16_42540) - 9331342..9331680 (+) 339 WP_327673564.1 GNAT family N-acetyltransferase -
  OHV16_RS42510 (OHV16_42545) - 9331764..9332795 (+) 1032 WP_327673566.1 NADPH:quinone reductase -
  OHV16_RS42515 (OHV16_42550) - 9332990..9333937 (+) 948 WP_327673568.1 alpha/beta hydrolase -
  OHV16_RS42520 (OHV16_42555) - 9334082..9335260 (+) 1179 WP_371591093.1 sensor histidine kinase -
  OHV16_RS42525 (OHV16_42560) vraR 9335257..9335916 (+) 660 WP_327659658.1 response regulator transcription factor Regulator
  OHV16_RS42530 (OHV16_42565) - 9336026..9336439 (+) 414 WP_327673570.1 hypothetical protein -
  OHV16_RS42535 (OHV16_42570) - 9336447..9337253 (-) 807 WP_327673572.1 MBL fold metallo-hydrolase -
  OHV16_RS42540 (OHV16_42575) - 9337397..9338428 (-) 1032 WP_327673574.1 LacI family DNA-binding transcriptional regulator -
  OHV16_RS42545 (OHV16_42580) - 9338651..9339496 (+) 846 WP_327673576.1 prephenate dehydratase -
  OHV16_RS42550 (OHV16_42585) - 9339533..9340393 (+) 861 WP_327673578.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23690.58 Da        Isoelectric Point: 5.3719

>NTDB_id=648141 OHV16_RS42525 WP_327659658.1 9335257..9335916(+) (vraR) [Streptomyces sp. NBC_00470]
MTEPIRVLVCDDQVLVRTGLVTIIDAQPDLEVVGECGDGKTAVDLAERLRPDVVLMDVRMPVLDGIEATRRLAGSGVRHP
VRVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLLGIRTVATGAALLDPQVTRQLVGRYAARIRPAEDTAPDTPLTP
RELEVLLLIADGLSNSEIAAALLLSQETVKTFVSRILAKLGLRDRVQAVVHAYRRGLVT

Nucleotide


Download         Length: 660 bp        

>NTDB_id=648141 OHV16_RS42525 WP_327659658.1 9335257..9335916(+) (vraR) [Streptomyces sp. NBC_00470]
GTGACCGAGCCGATCCGGGTACTGGTCTGCGACGACCAAGTACTGGTCCGCACCGGCCTGGTGACCATCATCGACGCCCA
GCCCGACCTGGAAGTGGTGGGCGAGTGCGGGGACGGCAAGACGGCCGTCGACCTCGCCGAACGACTGCGCCCTGACGTCG
TGTTGATGGACGTACGCATGCCGGTGCTCGACGGCATCGAGGCGACCCGGCGGCTCGCCGGTTCCGGGGTGCGGCATCCC
GTCAGGGTGCTCGTCGTCACCACGTTCAACCTGGACGAGTACGTCTACGAGGCACTGCGCGCCGGGGCGAGCGGATTCCT
CCTCAAGGACGCACCGCCGGCCCAACTACTCCTGGGGATAAGGACCGTGGCCACCGGCGCGGCCCTCCTCGACCCCCAGG
TGACACGTCAGCTCGTGGGCAGATACGCCGCCCGGATCCGGCCCGCCGAGGACACCGCGCCCGACACCCCGCTGACACCG
CGCGAACTGGAGGTCCTGCTCCTCATCGCGGACGGCCTGTCCAACAGTGAGATCGCCGCGGCCCTCCTGTTGAGCCAGGA
GACCGTCAAGACCTTCGTCTCCCGCATCCTCGCCAAACTCGGCCTCCGCGACCGCGTCCAGGCGGTCGTCCATGCCTACC
GCCGGGGGCTGGTGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.72

97.717

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.384