Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L2M54_RS16950 Genome accession   NZ_CP091173
Coordinates   3514358..3514831 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB5116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3509358..3519831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2M54_RS16935 (L2M54_16935) pilX 3511987..3512805 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2M54_RS16940 (L2M54_16940) pilW 3512802..3513803 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2M54_RS16945 (L2M54_16945) pilV 3513804..3514364 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2M54_RS16950 (L2M54_16950) fimU 3514358..3514831 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2M54_RS16955 (L2M54_16955) ispH 3515001..3515951 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2M54_RS16960 (L2M54_16960) gmk 3516074..3516703 (+) 630 WP_000015937.1 guanylate kinase -
  L2M54_RS16965 (L2M54_16965) rpoZ 3516776..3517054 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2M54_RS16970 (L2M54_16970) - 3517093..3517223 (+) 131 Protein_3314 hypothetical protein -
  L2M54_RS16975 (L2M54_16975) - 3517263..3519368 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=648133 L2M54_RS16950 WP_001214065.1 3514358..3514831(-) (fimU) [Acinetobacter baumannii strain AB5116]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=648133 L2M54_RS16950 WP_001214065.1 3514358..3514831(-) (fimU) [Acinetobacter baumannii strain AB5116]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1