Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2M54_RS16935 Genome accession   NZ_CP091173
Coordinates   3511987..3512805 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain AB5116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506987..3517805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2M54_RS16920 (L2M54_16920) pilE 3507214..3507639 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  L2M54_RS16925 (L2M54_16925) pilY2 3507636..3508118 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  L2M54_RS16930 (L2M54_16930) - 3508131..3511975 (-) 3845 Protein_3306 PilC/PilY family type IV pilus protein -
  L2M54_RS16935 (L2M54_16935) pilX 3511987..3512805 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2M54_RS16940 (L2M54_16940) pilW 3512802..3513803 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2M54_RS16945 (L2M54_16945) pilV 3513804..3514364 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2M54_RS16950 (L2M54_16950) fimU 3514358..3514831 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  L2M54_RS16955 (L2M54_16955) ispH 3515001..3515951 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2M54_RS16960 (L2M54_16960) gmk 3516074..3516703 (+) 630 WP_000015937.1 guanylate kinase -
  L2M54_RS16965 (L2M54_16965) rpoZ 3516776..3517054 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2M54_RS16970 (L2M54_16970) - 3517093..3517223 (+) 131 Protein_3314 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=648130 L2M54_RS16935 WP_000149376.1 3511987..3512805(-) (pilX) [Acinetobacter baumannii strain AB5116]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=648130 L2M54_RS16935 WP_000149376.1 3511987..3512805(-) (pilX) [Acinetobacter baumannii strain AB5116]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989