Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L2M54_RS16560 Genome accession   NZ_CP091173
Coordinates   3436248..3436883 (+) Length   211 a.a.
NCBI ID   WP_000472265.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB5116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3431248..3441883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2M54_RS16545 (L2M54_16545) adeT2 3432308..3433294 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  L2M54_RS16550 (L2M54_16550) - 3433374..3434189 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  L2M54_RS16555 (L2M54_16555) recG 3434210..3436255 (+) 2046 WP_005127896.1 ATP-dependent DNA helicase RecG -
  L2M54_RS16560 (L2M54_16560) comF 3436248..3436883 (+) 636 WP_000472265.1 phosphoribosyltransferase family protein Machinery gene
  L2M54_RS16565 (L2M54_16565) - 3436886..3437287 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  L2M54_RS16570 (L2M54_16570) - 3437302..3437883 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  L2M54_RS16575 (L2M54_16575) - 3438041..3439054 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  L2M54_RS16580 (L2M54_16580) - 3439124..3439411 (-) 288 WP_000250997.1 STAS domain-containing protein -
  L2M54_RS16585 (L2M54_16585) - 3439423..3440064 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  L2M54_RS16590 (L2M54_16590) - 3440091..3440771 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  L2M54_RS16595 (L2M54_16595) mlaE 3440771..3441547 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24584.74 Da        Isoelectric Point: 9.7140

>NTDB_id=648127 L2M54_RS16560 WP_000472265.1 3436248..3436883(+) (comF) [Acinetobacter baumannii strain AB5116]
MFKFLNPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=648127 L2M54_RS16560 WP_000472265.1 3436248..3436883(+) (comF) [Acinetobacter baumannii strain AB5116]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981