Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHV16_RS25345 Genome accession   NZ_CP107889
Coordinates   5576215..5576862 (-) Length   215 a.a.
NCBI ID   WP_371590834.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5571215..5581862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS25315 (OHV16_25345) - 5571238..5571792 (-) 555 WP_327671147.1 helix-turn-helix domain-containing protein -
  OHV16_RS25320 (OHV16_25350) - 5571912..5572406 (+) 495 WP_327671148.1 nuclear transport factor 2 family protein -
  OHV16_RS25325 (OHV16_25355) - 5572422..5573438 (-) 1017 WP_327671149.1 zinc-binding dehydrogenase -
  OHV16_RS25330 (OHV16_25360) - 5573510..5574718 (-) 1209 WP_327671150.1 NAD(P)-binding protein -
  OHV16_RS25335 (OHV16_25365) - 5574929..5575639 (+) 711 WP_327671151.1 pentapeptide repeat-containing protein -
  OHV16_RS25340 (OHV16_25370) - 5575660..5576160 (-) 501 WP_266712566.1 hypothetical protein -
  OHV16_RS25345 (OHV16_25375) vraR 5576215..5576862 (-) 648 WP_371590834.1 response regulator Regulator
  OHV16_RS25350 (OHV16_25380) - 5576880..5578079 (-) 1200 WP_327675576.1 sensor histidine kinase -
  OHV16_RS25355 (OHV16_25385) - 5578410..5578979 (+) 570 WP_327662208.1 heme-binding protein -
  OHV16_RS25360 (OHV16_25390) - 5579049..5579651 (+) 603 WP_327671153.1 ankyrin repeat domain-containing protein -
  OHV16_RS25365 (OHV16_25395) - 5579648..5580799 (+) 1152 WP_327671154.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22982.38 Da        Isoelectric Point: 5.6345

>NTDB_id=648103 OHV16_RS25345 WP_371590834.1 5576215..5576862(-) (vraR) [Streptomyces sp. NBC_00470]
MTQPIRILLCDDHVVVRAGLLALLDSAAGIEVVGEAGTGEEAIALAAKLRPDVVLMDLQLGEGMDGVETTRRLTTDPEDP
ATGHRPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHAAAEGRTALSAPVASRVMANMRKPRPTLTDRERD
ILAQLAHGLGNREIAKALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 648 bp        

>NTDB_id=648103 OHV16_RS25345 WP_371590834.1 5576215..5576862(-) (vraR) [Streptomyces sp. NBC_00470]
ATGACCCAGCCCATCCGCATCCTCCTCTGTGACGACCACGTCGTCGTTCGTGCCGGGTTGTTGGCGTTGCTCGACAGTGC
GGCGGGGATCGAGGTCGTCGGGGAGGCCGGTACCGGGGAGGAGGCGATCGCGCTCGCCGCGAAGCTCCGGCCCGACGTCG
TCCTCATGGACCTGCAGCTGGGCGAGGGCATGGACGGCGTGGAGACGACCCGCCGCCTCACCACCGACCCGGAGGACCCG
GCCACCGGGCACCGCCCCCACGTCCTCGTTCTGACCACGTACGACACCGACGCCGACATCACCCGCGCCATCGAGGCGGG
CGCGACGGGCTATCTGCTCAAGGCGGAGCGGCCCGAGGAGCTGTTCGCGGCGATCCACGCGGCCGCGGAGGGCCGCACCG
CGCTGTCCGCCCCGGTCGCCAGCCGCGTCATGGCCAATATGCGCAAGCCGCGGCCCACCCTCACCGACCGCGAGCGCGAC
ATCCTCGCCCAGCTGGCGCACGGCCTCGGCAACCGGGAGATCGCCAAGGCCCTGTTCATCAGCGAGGCCACGGTCAAGAC
CCACCTGGGCCGCATCTACGACAAGCTCGGCGTGGACACCCGGGCCGGCGCCGTCTCGGTCGCGAAGGAGCAGCGGCTAC
TGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(7-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.785

99.535

0.386
  degU Bacillus subtilis subsp. subtilis str. 168

35.371

100

0.377