Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHV16_RS22430 Genome accession   NZ_CP107889
Coordinates   4964510..4965109 (-) Length   199 a.a.
NCBI ID   WP_266711576.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4959510..4970109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS22410 (OHV16_22450) - 4960121..4960804 (-) 684 WP_371590805.1 SigE family RNA polymerase sigma factor -
  OHV16_RS22415 (OHV16_22455) - 4961111..4962181 (-) 1071 WP_266711570.1 aspartate-semialdehyde dehydrogenase -
  OHV16_RS22420 (OHV16_22460) - 4962181..4963467 (-) 1287 WP_266711572.1 aspartate kinase -
  OHV16_RS22425 (OHV16_22465) - 4963780..4964517 (-) 738 WP_327662698.1 DUF5063 domain-containing protein -
  OHV16_RS22430 (OHV16_22470) recR 4964510..4965109 (-) 600 WP_266711576.1 recombination mediator RecR Machinery gene
  OHV16_RS22435 (OHV16_22475) - 4965181..4965525 (-) 345 WP_266711578.1 YbaB/EbfC family nucleoid-associated protein -
  OHV16_RS22440 (OHV16_22480) - 4965873..4966637 (+) 765 WP_327662697.1 SLATT domain-containing protein -
  OHV16_RS22445 (OHV16_22485) - 4966825..4967475 (-) 651 WP_327662696.1 hypothetical protein -
  OHV16_RS22450 (OHV16_22490) - 4967601..4968284 (-) 684 WP_266711584.1 GntR family transcriptional regulator -
  OHV16_RS22455 (OHV16_22495) - 4968414..4969769 (-) 1356 WP_327670846.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21766.12 Da        Isoelectric Point: 4.9909

>NTDB_id=648093 OHV16_RS22430 WP_266711576.1 4964510..4965109(-) (recR) [Streptomyces sp. NBC_00470]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDPRRDGSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648093 OHV16_RS22430 WP_266711576.1 4964510..4965109(-) (recR) [Streptomyces sp. NBC_00470]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGGCGGCTCGCGCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGTGCGACGTGTGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGGCGGGACGGTTCCGTG
ATCTGTGTCGTGGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGCACCCGTGAGTTCCGCGGGCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCCGACGATCTGCGGATAAGGGAGCTTCTCGCCCGCCTCGCGGACGGCA
CGGTCACCGAGCTCATCCTCGCCACCGACCCGAACCTCGAGGGCGAGGCCACAGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCCGTCGGGGGCGACCTGGAGTACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGAAGACTCCTAGATGTCTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457