Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SCAZ3_RS09535 Genome accession   NZ_AIDX01000001
Coordinates   1967826..1969055 (+) Length   409 a.a.
NCBI ID   WP_003048166.1    Uniprot ID   A0AAE4Q739
Organism   Streptococcus canis FSL Z3-227     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962826..1974055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS12595 - 1963066..1963320 (+) 255 WP_099983065.1 IS3 family transposase -
  SCAZ3_RS09515 (SCAZ3_05190) - 1963418..1964692 (-) 1275 WP_003048155.1 hydroxymethylglutaryl-CoA reductase, degradative -
  SCAZ3_RS09520 (SCAZ3_05195) - 1964679..1965854 (-) 1176 WP_003048157.1 hydroxymethylglutaryl-CoA synthase -
  SCAZ3_RS09525 (SCAZ3_05200) - 1966062..1966901 (+) 840 WP_003048159.1 thymidylate synthase -
  SCAZ3_RS09530 (SCAZ3_05205) - 1966981..1967478 (+) 498 WP_003048161.1 dihydrofolate reductase -
  SCAZ3_RS09535 (SCAZ3_05215) clpX 1967826..1969055 (+) 1230 WP_003048166.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SCAZ3_RS09540 (SCAZ3_05220) yihA 1969065..1969664 (+) 600 WP_003048167.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SCAZ3_RS09545 (SCAZ3_05225) - 1969814..1970554 (+) 741 WP_003048168.1 hypothetical protein -
  SCAZ3_RS09550 - 1970683..1971648 (-) 966 Protein_1872 IS30 family transposase -
  SCAZ3_RS09555 (SCAZ3_05240) - 1971793..1972608 (-) 816 WP_099983066.1 IS982 family transposase -
  SCAZ3_RS12600 - 1972649..1973280 (-) 632 Protein_1874 IS30 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44970.51 Da        Isoelectric Point: 4.6207

>NTDB_id=64802 SCAZ3_RS09535 WP_003048166.1 1967826..1969055(+) (clpX) [Streptococcus canis FSL Z3-227]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLNILNQYVVGQDR
AKRALAVAVYNHYKRVSFAESRDDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIASKAIERKTGARGLRSIIEETMLDIMFEVPSQEDVTKVRITKAAVEG
KAKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=64802 SCAZ3_RS09535 WP_003048166.1 1967826..1969055(+) (clpX) [Streptococcus canis FSL Z3-227]
ATGGCAGGAAATCGTACTAACGATATTAAGGTATATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTCAAAAAAATCAT
TGCAGGGAACAACGTTTTTATTTGTAATGAATGTGTAGCCCTATCACAAGAAATTATCAAAGAAGAATTGGCAGAAGAAG
TACTGGCTGATTTAACAGAGGTTCCAAAACCAAAAGAACTTCTTAATATTTTAAACCAATACGTGGTTGGTCAAGACCGT
GCCAAACGGGCCTTAGCAGTTGCAGTCTATAATCATTACAAGCGTGTTTCATTTGCTGAAAGCCGTGATGACGAAGATGT
TGATTTGCAAAAATCAAATATTTTAATGATTGGCCCAACAGGCTCTGGAAAGACGTTTTTGGCACAGACATTGGCTAAGA
GTTTAAATGTGCCTTTTGCTATTGCAGATGCTACCTCCTTAACAGAAGCTGGATATGTGGGAGAGGACGTTGAAAATATC
CTTCTCAAACTGATTCAAGCAGCGGATTATAATGTGGAGCGAGCAGAGCGTGGCATCATTTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAGAATGTGTCCATCACACGAGATGTGTCAGGCGAGGGAGTACAACAGGCTCTGTTAAAAATTA
TTGAAGGTACTGTTGCGAGTGTTCCTCCTCAAGGTGGGCGAAAGCACCCTAATCAGGAAATGATTCAAATTGATACAAAA
AATATCTTATTCATTGTTGGTGGGGCATTTGATGGCATTGAGGAGATTGTTAAACAGCGTCTAGGGGAAAAAATCATTGG
TTTTGGTCAAAACAGCCGTAAAATTGATGATAATGCTTCTTACATGCAAGAAATTATATCAGAAGATATCCAAAAATTTG
GTCTTATTCCTGAATTTATTGGCCGTTTACCAGTTGTGGCAGCCCTTGAACAGCTTAACACCTCAGACTTGATCCAAATA
TTAACAGAGCCAAGAAATGCTCTTGTTAAACAATACCAAGCCTTGTTATCTTATGATGGTGTTGAATTAGAATTTGAGAA
GGGTGCCCTTGAAGCCATTGCAAGTAAAGCGATTGAACGCAAAACAGGAGCACGTGGTCTCCGTTCTATCATTGAAGAAA
CCATGTTGGACATTATGTTTGAAGTGCCAAGTCAAGAAGATGTGACTAAAGTTCGTATCACCAAGGCTGCAGTTGAAGGT
AAGGCAAAACCCGTTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.487

100

0.895
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment