Detailed information NTG0648015

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L2Y00_RS24035
• Genome accession: NZ_CP091143
• Coordinates: 5287617..5288489 (-)
• Length: 290 a.a.
• NCBI ID: WP_024420998.1
• Uniprot ID: -
• Organism: Pseudomonas avellanae strain NCPPB 3491
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	5285952..5286968	5287617..5288489	flank	649

Gene organization within MGE regions

Location: 5285952..5288489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Y00_RS24025 (L2Y00_24025)	-	5285952..5286968 (-)	1017	WP_005614760.1	IS30-like element ISPsy38 family transposase	-
L2Y00_RS24030 (L2Y00_24030)	coaE	5287003..5287620 (-)	618	WP_005614790.1	dephospho-CoA kinase	-
L2Y00_RS24035 (L2Y00_24035)	pilD	5287617..5288489 (-)	873	WP_024420998.1	A24 family peptidase	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32027.27 Da
• Isoelectric Point: 8.1553

>NTDB_id=648015 L2Y00_RS24035 WP_024420998.1 5287617..5288489(-) (pilD) [Pseudomonas avellanae strain NCPPB 3491]
MPLLDLLASSPLAFVTTCCLLGLIVGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPVFNLILPHSSCPHCAHKIR
PWENLPIISYLLLRGKCSQCKAPISKRYPVVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLTLWSVFWLFKLMTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=648015 L2Y00_RS24035 WP_024420998.1 5287617..5288489(-) (pilD) [Pseudomonas avellanae strain NCPPB 3491]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCCTGGCCTTCGTCACCACATGCTGCCTGCTCGGCCTAATCGTCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTCCCAAAAATGATGGAGCGCGACTGGAAAGCGCAATCACGGGAAATGCTCGGCC
TCCCTGCCGAACCGGACCAACCCGTCTTCAACCTGATCCTGCCGCACTCCAGTTGCCCGCACTGCGCGCACAAGATCCGC
CCATGGGAAAATCTGCCGATCATCAGTTACCTGTTGCTGCGCGGCAAATGCTCGCAATGCAAAGCACCGATCAGCAAGCG
CTACCCAGTGGTGGAGCTGACCTGCGCAGTGTTATCGGCCTACGTCGCCTGGCACTTCGGTTTCGGCTGGCAGGCGGCTG
CGATGCTGGTGTTGAGTTGGGGTTTGCTGGCGATGAGCCTGATCGATGCCGATCATCAGCTGTTGCCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTTAACGCCTTTGGGCTGTTCACCTCGCTGAATGATGCGCTGTGGGGTGCGGT
GGCCGGTTATCTGACGCTGTGGTCAGTGTTCTGGCTGTTCAAGTTGATGACGGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAATTGCTGGCCATGCTTGGCGCGTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGTTGTCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTATATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.064	97.586	0.528
pilD	Vibrio campbellii strain DS40M4	51.59	97.586	0.503
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	51.866	92.414	0.479