Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG889_RS19475 Genome accession   NZ_CP107882
Coordinates   4535284..4535883 (-) Length   199 a.a.
NCBI ID   WP_326579680.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4530284..4540883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG889_RS19455 (OG889_19490) - 4531254..4532096 (+) 843 WP_326579672.1 alpha/beta hydrolase -
  OG889_RS19460 (OG889_19495) - 4532093..4533028 (-) 936 WP_326579674.1 M56 family metallopeptidase -
  OG889_RS19465 (OG889_19500) - 4533451..4534041 (-) 591 WP_326579676.1 hypothetical protein -
  OG889_RS19470 (OG889_19505) - 4534629..4535291 (-) 663 WP_326579678.1 DUF5063 domain-containing protein -
  OG889_RS19475 (OG889_19510) recR 4535284..4535883 (-) 600 WP_326579680.1 recombination mediator RecR Machinery gene
  OG889_RS19480 (OG889_19515) - 4536028..4536375 (-) 348 WP_326579682.1 YbaB/EbfC family nucleoid-associated protein -
  OG889_RS19485 (OG889_19520) - 4536671..4537438 (+) 768 WP_326579684.1 SLATT domain-containing protein -
  OG889_RS19490 (OG889_19525) - 4537582..4537755 (+) 174 Protein_3869 SGNH/GDSL hydrolase family protein -
  OG889_RS19495 (OG889_19530) - 4537797..4540184 (-) 2388 WP_326579686.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21890.24 Da        Isoelectric Point: 4.9909

>NTDB_id=648013 OG889_RS19475 WP_326579680.1 4535284..4535883(-) (recR) [Streptomyces sp. NBC_00481]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQTLLEVKARVRFCATCGNVAQEELCNICRDPRRDPTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=648013 OG889_RS19475 WP_326579680.1 4535284..4535883(-) (recR) [Streptomyces sp. NBC_00481]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGGCTCGCGCAGACCCTCCTCGAAGTGAAGGCGAGGGTCC
GTTTCTGCGCGACCTGCGGCAATGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCCGACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAACGCACTCGCGAATTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGGATACGGGAGCTGCTGACCCGCCTGGCCGACGGGA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAATCTCGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGATTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472