Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA73_RS38470 Genome accession   NZ_CP107880
Coordinates   8615704..8616372 (+) Length   222 a.a.
NCBI ID   WP_327657443.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8610704..8621372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS38465 (OHA73_38465) - 8611460..8615440 (+) 3981 WP_327657442.1 glycosyl hydrolase -
  OHA73_RS38470 (OHA73_38470) vraR 8615704..8616372 (+) 669 WP_327657443.1 response regulator transcription factor Regulator
  OHA73_RS38475 (OHA73_38475) - 8616383..8617567 (+) 1185 WP_327657444.1 histidine kinase -
  OHA73_RS38480 (OHA73_38480) - 8617735..8618175 (+) 441 WP_327657445.1 hypothetical protein -
  OHA73_RS38485 (OHA73_38485) - 8618189..8619112 (+) 924 WP_327657446.1 ABC transporter ATP-binding protein -
  OHA73_RS38490 (OHA73_38490) - 8619112..8620728 (+) 1617 WP_327657447.1 hypothetical protein -
  OHA73_RS38495 (OHA73_38495) - 8620872..8621201 (-) 330 WP_327657448.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23822.72 Da        Isoelectric Point: 8.4650

>NTDB_id=647963 OHA73_RS38470 WP_327657443.1 8615704..8616372(+) (vraR) [Streptomyces sp. NBC_00483]
MTIRVLMVDDQEMVRRGMGRILESQPDIEVVGEAADGVAALEQARLLRPDVALMDVRMPRMDGLEVTRRLLEPASGLTTK
VVVVTTFDLDEYVYPALRYGASGFLLKRSGPTLLVEAVRAAMVGDSLISPSITVRLLRHVTGNGASAGAGSARPAMVEPL
TKREIEVAGKVAEGLTNADIAGEMFISPGTVKTHVASIQRKLGVRNRVGIAVRAWEMGYAPS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=647963 OHA73_RS38470 WP_327657443.1 8615704..8616372(+) (vraR) [Streptomyces sp. NBC_00483]
GTGACGATTCGTGTGCTGATGGTGGATGACCAGGAGATGGTGCGCCGCGGAATGGGGCGGATCCTCGAGAGTCAACCGGA
CATCGAAGTGGTCGGTGAGGCCGCCGACGGAGTGGCCGCACTGGAACAGGCCCGCCTGCTGCGGCCCGATGTCGCTCTCA
TGGACGTGCGCATGCCCCGGATGGATGGACTCGAGGTCACCCGCAGGCTGCTCGAACCCGCCTCCGGGCTCACCACGAAG
GTCGTCGTTGTGACGACCTTCGACCTGGACGAGTACGTGTATCCGGCGCTGCGCTACGGCGCTTCAGGCTTCCTGCTCAA
GCGCTCGGGGCCCACGCTGCTCGTGGAGGCGGTCCGTGCGGCCATGGTGGGGGACAGCCTCATCAGTCCCTCGATCACGG
TCCGGCTGCTGCGCCATGTCACAGGCAACGGAGCTTCCGCTGGGGCGGGTTCGGCGCGGCCGGCGATGGTCGAACCGCTC
ACCAAGCGGGAGATCGAGGTCGCTGGAAAGGTGGCCGAGGGCCTGACCAACGCCGACATCGCCGGCGAGATGTTCATCTC
GCCGGGCACCGTCAAGACACATGTCGCGAGCATCCAGCGCAAGCTCGGTGTCCGCAACCGGGTCGGCATCGCCGTCCGGG
CCTGGGAGATGGGGTACGCCCCTTCCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.963

97.297

0.369
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.369