Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA73_RS28850 Genome accession   NZ_CP107880
Coordinates   6400359..6401012 (-) Length   217 a.a.
NCBI ID   WP_327656484.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6395359..6406012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS28830 (OHA73_28830) atpD 6395576..6397012 (+) 1437 WP_266714127.1 F0F1 ATP synthase subunit beta -
  OHA73_RS28835 (OHA73_28835) - 6397128..6397502 (+) 375 WP_266714129.1 F0F1 ATP synthase subunit epsilon -
  OHA73_RS28840 (OHA73_28840) - 6397663..6398118 (+) 456 WP_266714131.1 DUF2550 domain-containing protein -
  OHA73_RS28845 (OHA73_28845) - 6398321..6400180 (-) 1860 WP_327656483.1 glycoside hydrolase family 18 chitinase -
  OHA73_RS28850 (OHA73_28850) vraR 6400359..6401012 (-) 654 WP_327656484.1 response regulator transcription factor Regulator
  OHA73_RS28855 (OHA73_28855) - 6401009..6402193 (-) 1185 WP_327656485.1 sensor histidine kinase -
  OHA73_RS28860 (OHA73_28860) - 6402357..6402908 (+) 552 WP_266714137.1 hypothetical protein -
  OHA73_RS28865 (OHA73_28865) - 6402905..6403477 (-) 573 WP_266714139.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHA73_RS28870 (OHA73_28870) - 6403491..6404246 (-) 756 WP_267072786.1 ABC transporter permease -
  OHA73_RS28875 (OHA73_28875) - 6404252..6405034 (-) 783 WP_267069223.1 ATP-binding cassette domain-containing protein -
  OHA73_RS28880 (OHA73_28880) - 6405117..6405755 (+) 639 WP_266714143.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23175.80 Da        Isoelectric Point: 4.6092

>NTDB_id=647935 OHA73_RS28850 WP_327656484.1 6400359..6401012(-) (vraR) [Streptomyces sp. NBC_00483]
MTSVIRVLVAEDQSAVRAGLVLILNSAPDIEVVGEAEDGERAVSLARELRPDLVLMDVQMPRLDGVSATREVVAEGLADV
LMLTTFDLDAYVFGALRAGASGFLLKNTDAKDLIEGVRTVARGEGMIAPAVTRRLIAEFAASPGKPEPMAAPPELETLTR
REREVLGRLGEGLSNAEIAVRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=647935 OHA73_RS28850 WP_327656484.1 6400359..6401012(-) (vraR) [Streptomyces sp. NBC_00483]
GTGACCTCCGTGATCCGCGTACTCGTCGCCGAGGACCAGTCCGCCGTACGGGCCGGGCTCGTGCTCATCCTGAACAGCGC
GCCCGACATCGAGGTCGTCGGCGAGGCCGAGGACGGCGAGCGGGCGGTGTCCCTCGCCCGCGAACTCCGACCCGACCTGG
TCCTGATGGACGTCCAGATGCCCCGGCTCGACGGGGTTTCGGCCACGCGCGAGGTCGTCGCCGAAGGCCTCGCTGACGTG
CTCATGCTGACCACCTTCGACCTCGACGCGTACGTGTTCGGGGCGCTGCGCGCGGGCGCGTCCGGGTTCCTGCTGAAGAA
CACGGACGCGAAGGACCTGATCGAGGGCGTACGGACGGTGGCGCGCGGCGAGGGGATGATCGCCCCGGCCGTGACGCGCC
GCCTGATCGCCGAGTTCGCGGCGAGCCCCGGAAAGCCCGAACCGATGGCCGCTCCCCCGGAGTTGGAGACCCTGACCCGG
CGCGAGCGGGAGGTGCTCGGCCGCCTCGGCGAGGGGCTGTCGAACGCGGAGATCGCGGTACGTCTCGACATGGCGGAGGC
GACGGTGAAGACCCACGTCAGCCGCCTGCTCGGCAAGCTGGAACTGCGCAGCCGAGTCCAAGCGGCCGTACTGGCACAGG
AGTTGGGCCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.395

99.078

0.41
  degU Bacillus subtilis subsp. subtilis str. 168

38.938

100

0.406