Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA73_RS21235 Genome accession   NZ_CP107880
Coordinates   4776107..4776772 (-) Length   221 a.a.
NCBI ID   WP_266711607.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4771107..4781772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS21215 (OHA73_21215) - 4771714..4772220 (-) 507 WP_267069987.1 MarR family transcriptional regulator -
  OHA73_RS21220 (OHA73_21220) - 4772313..4773248 (+) 936 WP_327655829.1 ABC transporter ATP-binding protein -
  OHA73_RS21225 (OHA73_21225) - 4773245..4774855 (+) 1611 WP_327655830.1 ABC transporter permease -
  OHA73_RS21230 (OHA73_21230) - 4774864..4776087 (-) 1224 WP_327655831.1 cytochrome P450 -
  OHA73_RS21235 (OHA73_21235) vraR 4776107..4776772 (-) 666 WP_266711607.1 response regulator transcription factor Regulator
  OHA73_RS21240 (OHA73_21240) - 4776769..4778103 (-) 1335 WP_327655832.1 histidine kinase -
  OHA73_RS21245 (OHA73_21245) - 4778226..4779116 (-) 891 WP_266711611.1 alpha/beta hydrolase -
  OHA73_RS21250 (OHA73_21250) - 4779244..4779876 (+) 633 WP_266711613.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24042.80 Da        Isoelectric Point: 4.6799

>NTDB_id=647916 OHA73_RS21235 WP_266711607.1 4776107..4776772(-) (vraR) [Streptomyces sp. NBC_00483]
MIRVLVADDQMMVREGFSVLLNAMPDFEVVGEAVNGVEAIAKVRELRPDVVLMDIRMPELNGIEATREIVAADAGTKVLV
LTTFDLDEYVYQALRAGASGFLLKDASARELADGVRVVASGEALLAPTVTRRLITEFAKLSETSRFPVGRQTGAYGELTE
RETEVLVLIAQGLSNIEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=647916 OHA73_RS21235 WP_266711607.1 4776107..4776772(-) (vraR) [Streptomyces sp. NBC_00483]
GTGATCAGGGTGCTGGTCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTGAACGCCATGCCGGACTT
CGAGGTCGTCGGCGAGGCGGTCAACGGCGTGGAGGCGATCGCCAAGGTCCGCGAACTCCGCCCCGACGTCGTCCTGATGG
ACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGCGAGATCGTCGCGGCGGACGCTGGCACGAAGGTGCTCGTC
CTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGGGCCGGGGCCTCGGGATTCCTCCTCAAGGACGCCTC
CGCACGCGAACTCGCCGACGGCGTACGGGTGGTGGCGAGCGGCGAGGCCCTCCTCGCGCCGACCGTGACCCGCCGCCTGA
TCACCGAGTTCGCCAAGCTGTCCGAGACGTCGAGGTTCCCCGTGGGGCGGCAGACGGGCGCGTACGGGGAGCTGACCGAG
CGCGAGACGGAGGTGCTCGTCCTGATCGCGCAGGGCCTGTCGAACATCGAGATCGCCGAGCGGCTCGTGGTCGCCGAGTC
GACGATCAAGACGCATGTGAGCCGGGTCCTGGTGAAGCTGGGGCTGCGCGACCGGACACAGGCGGCGGTGTTCGCGTACG
AGGCACGTCTGGTCACGCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.24

98.19

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

43.119

98.643

0.425