Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA73_RS20260 Genome accession   NZ_CP107880
Coordinates   4562834..4564240 (+) Length   468 a.a.
NCBI ID   WP_267070079.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4557834..4569240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS20240 (OHA73_20240) - 4558017..4558841 (-) 825 WP_266711285.1 sugar phosphate isomerase/epimerase -
  OHA73_RS20245 (OHA73_20245) - 4558985..4559935 (-) 951 WP_267070081.1 Ppx/GppA phosphatase family protein -
  OHA73_RS20250 (OHA73_20250) - 4560016..4560897 (+) 882 WP_266711287.1 hypothetical protein -
  OHA73_RS20255 (OHA73_20255) - 4560928..4562637 (-) 1710 WP_327655769.1 hypothetical protein -
  OHA73_RS20260 (OHA73_20260) radA/sms 4562834..4564240 (+) 1407 WP_267070079.1 DNA repair protein RadA Machinery gene
  OHA73_RS20265 (OHA73_20265) disA 4564333..4565457 (+) 1125 WP_266711290.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA73_RS20270 (OHA73_20270) - 4565539..4566360 (-) 822 WP_327655770.1 hypothetical protein -
  OHA73_RS20275 (OHA73_20275) - 4566547..4567212 (+) 666 WP_266711292.1 phosphatase PAP2 family protein -
  OHA73_RS20280 (OHA73_20280) - 4567323..4568006 (-) 684 WP_327655771.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49554.68 Da        Isoelectric Point: 8.2579

>NTDB_id=647909 OHA73_RS20260 WP_267070079.1 4562834..4564240(+) (radA/sms) [Streptomyces sp. NBC_00483]
MAARTKSKDRPSYRCTECGWQTAKWLGRCPECQAWGTIDEYGAPTVRTTSPGRVTTSALPIGQVDGKQATARTTGVPELD
RVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHKTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSTVLG
HLDAVKPSLLILDSVQTIASGEIDGAPGGVSQVREVAGALIRASKERGMSTLLVGHVTKEGTIAGPRLLEHLVDVVLSFE
GDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQIP
SPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPSADLAVALALASAASDTPLPKNLVAIGEVGLA
GEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVLEVADIGDALRVLPKGRRREAPREPEQRR

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=647909 OHA73_RS20260 WP_267070079.1 4562834..4564240(+) (radA/sms) [Streptomyces sp. NBC_00483]
ATGGCTGCCCGTACGAAATCCAAGGACCGTCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGGCGTGGGGGACGATCGACGAGTACGGCGCGCCCACCGTGCGCACCACCTCACCGGGCCGCG
TCACCACGTCGGCGCTGCCCATCGGCCAGGTCGACGGCAAGCAGGCGACGGCCAGGACCACCGGCGTGCCCGAGCTCGAC
CGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCTGCT
GCTCGACGTGGCGGCCAAGGCGGCCAGTGACGAGCACAAGACCCTCTACGTGACGGGCGAGGAGTCGGCCTCCCAGGTCC
GCCTGCGCGCCGACCGGATCCACGCGATCGACGACCACCTGTACCTGGCCGCCGAGACCGATCTGTCCACCGTCCTCGGC
CACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCCGTACAGACGATCGCGTCCGGGGAGATCGACGGGGCGCC
CGGTGGGGTGTCGCAGGTGCGCGAGGTCGCGGGCGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCCTCG
TCGGCCACGTCACGAAGGAAGGCACGATCGCGGGCCCTCGCCTCCTGGAGCACCTGGTGGACGTCGTCCTCAGCTTCGAG
GGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTCAAGAACCGCTACGGGACGACGGACGAGGTCGGCTGCTTCGA
GCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGCGCCGAGCCGGTGCCCGGCA
CCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCGGAGGTCCAGGCGCTCACCGTGGACTCCCAGATCCCC
TCGCCCCGCCGCACCACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTCGAACAGCGCGGGAAGAT
CAGCGCGTTGGGCAAGAGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTGACCGAGCCCTCGGCCGACCTGGCCG
TGGCGCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTCCCCAAGAACCTTGTGGCGATCGGAGAAGTAGGCCTCGCG
GGCGAGGTCAGGCGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGGTTCACACACGCGCTCGTTCC
GTCCGATCCGGGAAAGGTCCCGGCCGGTATGAAGGTCCTGGAAGTCGCCGATATAGGGGACGCTCTGCGGGTGCTGCCGA
AGGGTCGTCGGCGAGAGGCCCCACGGGAGCCGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-428)

AAA domain (AAA_25)

(77-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.888

97.65

0.419
  radA Streptococcus pneumoniae D39

43.333

96.154

0.417
  radA Streptococcus pneumoniae R6

43.333

96.154

0.417
  radA Streptococcus pneumoniae Rx1

43.333

96.154

0.417
  radA Streptococcus mitis SK321

43.333

96.154

0.417
  radA Streptococcus mitis NCTC 12261

43.333

96.154

0.417
  radA Streptococcus pneumoniae TIGR4

43.333

96.154

0.417