Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   L1999_RS22500 Genome accession   NZ_CP091110
Coordinates   4706446..4707189 (-) Length   247 a.a.
NCBI ID   WP_235740592.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4701446..4712189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS22475 (L1999_22475) - 4701789..4702361 (-) 573 WP_235740587.1 Maf family protein -
  L1999_RS22480 (L1999_22480) - 4702579..4703658 (-) 1080 WP_235740588.1 hypothetical protein -
  L1999_RS22485 (L1999_22485) pilO 4703793..4704587 (-) 795 WP_235740589.1 type 4a pilus biogenesis protein PilO -
  L1999_RS22490 (L1999_22490) - 4704584..4705423 (-) 840 WP_235740590.1 PilN domain-containing protein -
  L1999_RS22495 (L1999_22495) pilM 4705420..4706418 (-) 999 WP_235740591.1 pilus assembly protein PilM -
  L1999_RS22500 (L1999_22500) comC 4706446..4707189 (-) 744 WP_235740592.1 A24 family peptidase Machinery gene
  L1999_RS29710 - 4707189..4707668 (-) 480 WP_275677205.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L1999_RS22510 (L1999_22510) - 4707823..4709028 (-) 1206 WP_235740593.1 type II secretion system F family protein -
  L1999_RS22515 (L1999_22515) pilT 4709021..4710070 (-) 1050 WP_235740594.1 type IV pilus twitching motility protein PilT Machinery gene
  L1999_RS22520 (L1999_22520) - 4710081..4711772 (-) 1692 WP_235740595.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27553.38 Da        Isoelectric Point: 9.7913

>NTDB_id=647800 L1999_RS22500 WP_235740592.1 4706446..4707189(-) (comC) [Neobacillus drentensis strain JC05]
MNLVFIIYGVVLGSFFNVIGLRVPVNKSIITPRSACPNCGHQLTPFELIPVLSYMFQKGKCRGCQSRISPIYPFFELLTG
ILFALAPYVFGWSGELVVALTFISMFIIITVSDIHYMIIPDKILVWFAGIFLLERIIWPLYPWWDSILGSVTGFLLLLII
AVVSKGGMGFGDVKLYALIGFVLGFKLVLLSFFLSTLFGAVIGGLALLLRVVKKRQPIPFGPFIAAGSLTAYFWGTKLIN
LYFQILY

Nucleotide


Download         Length: 744 bp        

>NTDB_id=647800 L1999_RS22500 WP_235740592.1 4706446..4707189(-) (comC) [Neobacillus drentensis strain JC05]
ATGAATTTAGTATTTATTATCTATGGAGTAGTACTGGGCTCCTTTTTTAACGTCATCGGTTTAAGAGTTCCGGTTAACAA
ATCAATCATCACACCAAGATCTGCATGTCCAAATTGCGGGCATCAGTTAACACCATTTGAACTAATTCCGGTTTTATCAT
ATATGTTCCAAAAAGGGAAATGCCGCGGCTGTCAGTCGCGGATTTCTCCTATCTATCCTTTTTTTGAACTATTAACCGGA
ATCTTATTTGCACTAGCACCATACGTGTTTGGATGGTCTGGAGAATTAGTCGTTGCCTTGACGTTTATCTCAATGTTTAT
TATTATCACCGTGTCCGATATCCATTATATGATCATCCCTGATAAAATTTTAGTTTGGTTTGCAGGGATTTTTTTATTGG
AACGAATTATTTGGCCGCTTTACCCTTGGTGGGATAGCATTCTAGGTTCCGTGACAGGGTTTCTTTTGCTCCTCATCATC
GCTGTTGTCAGTAAGGGTGGAATGGGCTTTGGTGATGTAAAGCTTTATGCTCTAATCGGCTTCGTGTTAGGATTTAAACT
TGTACTATTATCATTCTTTTTATCAACATTATTCGGTGCTGTAATCGGCGGTTTAGCTCTCTTGTTAAGAGTTGTGAAAA
AACGACAGCCTATCCCATTCGGTCCATTTATTGCGGCTGGATCATTGACAGCCTATTTTTGGGGTACCAAACTTATTAAC
CTATACTTTCAAATACTTTACTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50

97.976

0.49