Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   L1999_RS21470 Genome accession   NZ_CP091110
Coordinates   4515733..4516041 (+) Length   102 a.a.
NCBI ID   WP_235744423.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4510733..4521041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS21450 (L1999_21450) - 4510750..4512438 (+) 1689 WP_235744422.1 SNF2-related protein -
  L1999_RS21455 (L1999_21455) - 4512416..4513207 (+) 792 WP_235740420.1 YqhG family protein -
  L1999_RS21460 (L1999_21460) comGA 4513357..4514442 (+) 1086 WP_235740421.1 competence type IV pilus ATPase ComGA Machinery gene
  L1999_RS21465 (L1999_21465) comGB 4514429..4515460 (+) 1032 WP_235740422.1 competence type IV pilus assembly protein ComGB -
  L1999_RS21470 (L1999_21470) comGC 4515733..4516041 (+) 309 WP_235744423.1 competence type IV pilus major pilin ComGC Machinery gene
  L1999_RS21475 (L1999_21475) comGD 4516050..4516490 (+) 441 WP_235740423.1 competence type IV pilus minor pilin ComGD -
  L1999_RS21480 (L1999_21480) comGE 4516474..4516812 (+) 339 WP_235740424.1 competence type IV pilus minor pilin ComGE -
  L1999_RS21485 (L1999_21485) comGF 4516760..4517236 (+) 477 WP_235740425.1 competence type IV pilus minor pilin ComGF -
  L1999_RS21490 (L1999_21490) comGG 4517233..4517616 (+) 384 WP_235740426.1 competence type IV pilus minor pilin ComGG -
  L1999_RS21495 (L1999_21495) - 4517673..4517861 (+) 189 WP_235740427.1 YqzE family protein -
  L1999_RS21500 (L1999_21500) - 4518087..4518785 (+) 699 WP_235740428.1 helix-turn-helix domain-containing protein -
  L1999_RS21505 (L1999_21505) - 4518869..4519111 (+) 243 WP_235740429.1 DUF2626 domain-containing protein -
  L1999_RS21510 (L1999_21510) - 4519181..4520275 (-) 1095 WP_235740430.1 SAM-dependent methyltransferase -
  L1999_RS21515 (L1999_21515) - 4520281..4520916 (-) 636 WP_235740431.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11184.10 Da        Isoelectric Point: 6.9466

>NTDB_id=647794 L1999_RS21470 WP_235744423.1 4515733..4516041(+) (comGC) [Neobacillus drentensis strain JC05]
MKNEKGFTLIEMMIVMLIISVLLLITIPNVTKHNSNINNKGCEAYVKMVQAQVQAYQMEKNKIPTLAELQTAGYLNDVKG
CPNGQEVAIDSEGKVTSVAKAD

Nucleotide


Download         Length: 309 bp        

>NTDB_id=647794 L1999_RS21470 WP_235744423.1 4515733..4516041(+) (comGC) [Neobacillus drentensis strain JC05]
ATGAAAAATGAAAAAGGGTTTACCTTAATTGAAATGATGATTGTTATGTTAATAATTTCCGTTTTGCTTTTGATTACCAT
CCCTAACGTTACCAAGCATAATTCTAATATCAACAATAAAGGCTGCGAAGCTTACGTGAAAATGGTTCAAGCACAGGTCC
AAGCCTATCAAATGGAAAAAAATAAAATCCCAACACTCGCTGAATTACAAACCGCTGGCTATTTAAACGATGTCAAGGGC
TGTCCGAACGGTCAAGAAGTTGCAATTGATTCGGAAGGTAAGGTCACCTCTGTTGCAAAAGCAGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

55.682

86.275

0.48
  comGC Staphylococcus aureus MW2

40.217

90.196

0.363
  comGC Staphylococcus aureus N315

40.217

90.196

0.363