Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | L1999_RS21460 | Genome accession | NZ_CP091110 |
| Coordinates | 4513357..4514442 (+) | Length | 361 a.a. |
| NCBI ID | WP_235740421.1 | Uniprot ID | - |
| Organism | Neobacillus drentensis strain JC05 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4508357..4519442
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1999_RS21445 (L1999_21445) | gcvT | 4509189..4510292 (-) | 1104 | WP_235740419.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| L1999_RS21450 (L1999_21450) | - | 4510750..4512438 (+) | 1689 | WP_235744422.1 | SNF2-related protein | - |
| L1999_RS21455 (L1999_21455) | - | 4512416..4513207 (+) | 792 | WP_235740420.1 | YqhG family protein | - |
| L1999_RS21460 (L1999_21460) | comGA | 4513357..4514442 (+) | 1086 | WP_235740421.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L1999_RS21465 (L1999_21465) | comGB | 4514429..4515460 (+) | 1032 | WP_235740422.1 | competence type IV pilus assembly protein ComGB | - |
| L1999_RS21470 (L1999_21470) | comGC | 4515733..4516041 (+) | 309 | WP_235744423.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L1999_RS21475 (L1999_21475) | comGD | 4516050..4516490 (+) | 441 | WP_235740423.1 | competence type IV pilus minor pilin ComGD | - |
| L1999_RS21480 (L1999_21480) | comGE | 4516474..4516812 (+) | 339 | WP_235740424.1 | competence type IV pilus minor pilin ComGE | - |
| L1999_RS21485 (L1999_21485) | comGF | 4516760..4517236 (+) | 477 | WP_235740425.1 | competence type IV pilus minor pilin ComGF | - |
| L1999_RS21490 (L1999_21490) | comGG | 4517233..4517616 (+) | 384 | WP_235740426.1 | competence type IV pilus minor pilin ComGG | - |
| L1999_RS21495 (L1999_21495) | - | 4517673..4517861 (+) | 189 | WP_235740427.1 | YqzE family protein | - |
| L1999_RS21500 (L1999_21500) | - | 4518087..4518785 (+) | 699 | WP_235740428.1 | helix-turn-helix domain-containing protein | - |
| L1999_RS21505 (L1999_21505) | - | 4518869..4519111 (+) | 243 | WP_235740429.1 | DUF2626 domain-containing protein | - |
Sequence
Protein
Download Length: 361 a.a. Molecular weight: 40753.19 Da Isoelectric Point: 8.4680
>NTDB_id=647793 L1999_RS21460 WP_235740421.1 4513357..4514442(+) (comGA) [Neobacillus drentensis strain JC05]
MVVPIVSSIEILANRIIKDAVRNQATDIHIIPRKNDTLVQIRLTNKLIPRLSLPKDECDRLISHFKFTANMDIGERRRPQ
SGAVFCEVDGHLMGLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPSMTRKLLALLKHAHGLIIFTGPTGSGKTTTLY
SLLNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGVTYAAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLV
LSTMHTRDAKGAVYRLREFGVNWLEVEQTLIAVTAQRLVELTCPYCEGECSPLCYSYGRWKRASVFELLSGRNLNNVMKA
AKGEMFNTHYRTLKEVINKGIALGYIQETEYERLVYEDEPS
MVVPIVSSIEILANRIIKDAVRNQATDIHIIPRKNDTLVQIRLTNKLIPRLSLPKDECDRLISHFKFTANMDIGERRRPQ
SGAVFCEVDGHLMGLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPSMTRKLLALLKHAHGLIIFTGPTGSGKTTTLY
SLLNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGVTYAAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLV
LSTMHTRDAKGAVYRLREFGVNWLEVEQTLIAVTAQRLVELTCPYCEGECSPLCYSYGRWKRASVFELLSGRNLNNVMKA
AKGEMFNTHYRTLKEVINKGIALGYIQETEYERLVYEDEPS
Nucleotide
Download Length: 1086 bp
>NTDB_id=647793 L1999_RS21460 WP_235740421.1 4513357..4514442(+) (comGA) [Neobacillus drentensis strain JC05]
GTGGTGGTACCAATTGTTAGCTCGATTGAAATACTAGCTAATCGAATCATTAAAGATGCTGTCCGAAATCAAGCAACCGA
TATTCACATTATTCCTCGTAAGAATGACACACTTGTTCAAATCCGTTTAACCAACAAACTCATTCCCAGATTGTCCCTCC
CAAAAGATGAATGCGACAGGTTAATTTCACATTTTAAATTCACGGCGAATATGGACATCGGGGAAAGAAGACGCCCTCAA
AGCGGTGCCGTTTTTTGTGAAGTAGACGGGCATTTAATGGGGCTTAGGCTTTCCACACTCCCTTCAAACAACAGAGAGAG
CCTTGTCATCCGGCTTTTACCACAGCAAGAGCAAATACCCTTCCACCAACTTTCATTATTCCCTTCTATGACAAGAAAGC
TGTTAGCCCTGCTGAAACATGCACACGGATTAATCATTTTTACAGGTCCAACCGGTTCAGGCAAAACGACAACACTTTAT
TCCCTGCTAAACGAAACTGCCCACCTCTTTCATCGCAATGTTATCACCCTTGAAGATCCTATCGAAAAAAACTATGACTC
CGTCCTGCAAGTACAAGTAAACGAAAAAGCTGGTGTGACTTATGCAGCCGGTTTAAAAGCGATTCTTCGCCATGATCCGG
ATATTATCATGGTCGGGGAAATCAGGGATGCAGAAACAGCCAAAATCGCTGTCAGGGCTGCTCTTACTGGGCATCTAGTC
CTTTCCACTATGCATACTCGAGATGCAAAAGGAGCCGTTTACCGTCTCCGTGAATTTGGTGTGAACTGGCTAGAAGTTGA
GCAAACATTAATTGCTGTTACGGCTCAAAGATTAGTAGAACTTACCTGCCCTTATTGTGAAGGAGAGTGTTCGCCTTTGT
GTTATTCCTATGGCAGATGGAAAAGAGCAAGTGTTTTCGAACTTTTATCCGGCCGGAACTTAAACAATGTTATGAAGGCC
GCAAAAGGTGAAATGTTTAACACACACTACCGTACATTAAAAGAAGTTATTAACAAGGGCATTGCCCTCGGTTATATTCA
AGAAACCGAGTATGAACGGCTGGTGTATGAAGATGAGCCGTCATAA
GTGGTGGTACCAATTGTTAGCTCGATTGAAATACTAGCTAATCGAATCATTAAAGATGCTGTCCGAAATCAAGCAACCGA
TATTCACATTATTCCTCGTAAGAATGACACACTTGTTCAAATCCGTTTAACCAACAAACTCATTCCCAGATTGTCCCTCC
CAAAAGATGAATGCGACAGGTTAATTTCACATTTTAAATTCACGGCGAATATGGACATCGGGGAAAGAAGACGCCCTCAA
AGCGGTGCCGTTTTTTGTGAAGTAGACGGGCATTTAATGGGGCTTAGGCTTTCCACACTCCCTTCAAACAACAGAGAGAG
CCTTGTCATCCGGCTTTTACCACAGCAAGAGCAAATACCCTTCCACCAACTTTCATTATTCCCTTCTATGACAAGAAAGC
TGTTAGCCCTGCTGAAACATGCACACGGATTAATCATTTTTACAGGTCCAACCGGTTCAGGCAAAACGACAACACTTTAT
TCCCTGCTAAACGAAACTGCCCACCTCTTTCATCGCAATGTTATCACCCTTGAAGATCCTATCGAAAAAAACTATGACTC
CGTCCTGCAAGTACAAGTAAACGAAAAAGCTGGTGTGACTTATGCAGCCGGTTTAAAAGCGATTCTTCGCCATGATCCGG
ATATTATCATGGTCGGGGAAATCAGGGATGCAGAAACAGCCAAAATCGCTGTCAGGGCTGCTCTTACTGGGCATCTAGTC
CTTTCCACTATGCATACTCGAGATGCAAAAGGAGCCGTTTACCGTCTCCGTGAATTTGGTGTGAACTGGCTAGAAGTTGA
GCAAACATTAATTGCTGTTACGGCTCAAAGATTAGTAGAACTTACCTGCCCTTATTGTGAAGGAGAGTGTTCGCCTTTGT
GTTATTCCTATGGCAGATGGAAAAGAGCAAGTGTTTTCGAACTTTTATCCGGCCGGAACTTAAACAATGTTATGAAGGCC
GCAAAAGGTGAAATGTTTAACACACACTACCGTACATTAAAAGAAGTTATTAACAAGGGCATTGCCCTCGGTTATATTCA
AGAAACCGAGTATGAACGGCTGGTGTATGAAGATGAGCCGTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
56.338 |
98.338 |
0.554 |
| pilB | Glaesserella parasuis strain SC1401 |
39.489 |
97.507 |
0.385 |