Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   L1999_RS17175 Genome accession   NZ_CP091110
Coordinates   3659175..3660935 (-) Length   586 a.a.
NCBI ID   WP_235739664.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654175..3665935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS17160 (L1999_17160) - 3654299..3655498 (-) 1200 WP_235739661.1 sensor histidine kinase -
  L1999_RS17165 (L1999_17165) - 3655849..3657081 (-) 1233 WP_235739662.1 cytochrome P450 -
  L1999_RS17170 (L1999_17170) rcrQ 3657338..3659182 (-) 1845 WP_235739663.1 ABC transporter ATP-binding protein Regulator
  L1999_RS17175 (L1999_17175) rcrP 3659175..3660935 (-) 1761 WP_235739664.1 ABC transporter ATP-binding protein Regulator
  L1999_RS17180 (L1999_17180) - 3660960..3661457 (-) 498 WP_235739665.1 helix-turn-helix domain-containing protein -
  L1999_RS17185 (L1999_17185) - 3661661..3662179 (-) 519 WP_235739666.1 helix-turn-helix transcriptional regulator -
  L1999_RS17190 (L1999_17190) - 3662463..3663695 (+) 1233 WP_235744377.1 cytochrome P450 -
  L1999_RS17195 (L1999_17195) - 3663987..3665003 (-) 1017 WP_235739667.1 DnaD domain protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65128.07 Da        Isoelectric Point: 6.5402

>NTDB_id=647787 L1999_RS17175 WP_235739664.1 3659175..3660935(-) (rcrP) [Neobacillus drentensis strain JC05]
MLKIFKYFQKLDWLLVLCSLVSIVTQVWLDLKIPDYMEEITKLVQTDGSKISDVLIQGGYMLLCAIGSMLASMVTVFLAA
RVAAGFSVRLRGMVFDKTLSFSMEEISRFSTASLITRSTNDIMQVQMLIIMGLQVVIRAPIMAVWAILKITGKAWEWTAA
TGIAVAFLCVLIAIVVLVALPKFRVIQSLTDQLNRVTRENLSGIRVVRAYNAEGYQEEKFEQANNVLTKTNLFTGRTMAI
LFPSIGLMMSGMNLAIYWIGAVLINNAPMVDRLSRFSDMVVFSSYAMQIIMSFMMLSMVFIMMPRAAVSAKRINEVLDTE
VKIEDGNAKDTEKVTGVGEVEFRNVSFKYPDAEDYVLKNVSFKAHQGETVAIIGSTGSGKSTLLNLVPRFMDTSKGEVLI
DGVDVKKYSLEALRNKLGYVSQKAIMFSGSVASNVAFGEVENKPVSDIERAVDIAQGKEFVEKMEGQYEAEIAQGGTNIS
GGQKQRLSIARSIYKNPEIYLFDDSFSALDYKTDRILRSRLKKEIKDATSIIVAQRIGTIIDADRIIVLDQGEVAGIGTH
QELMRTCNVYQEIAYSQLSKEELEVG

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=647787 L1999_RS17175 WP_235739664.1 3659175..3660935(-) (rcrP) [Neobacillus drentensis strain JC05]
ATGCTGAAAATCTTTAAATATTTTCAAAAGCTAGATTGGCTGTTGGTTTTGTGCAGCTTGGTTTCCATCGTGACACAAGT
ATGGCTGGATTTAAAGATTCCCGATTATATGGAGGAAATCACCAAGCTTGTACAGACAGACGGAAGCAAAATAAGTGACG
TCCTCATCCAAGGCGGCTATATGCTATTATGTGCTATTGGCAGTATGTTGGCATCGATGGTAACTGTATTTTTGGCAGCG
AGGGTGGCGGCAGGCTTTTCGGTCCGATTGCGCGGCATGGTGTTTGATAAGACATTGTCTTTCTCAATGGAGGAAATCAG
CCGTTTTTCCACTGCCAGCCTAATTACGCGGTCCACAAATGATATCATGCAAGTCCAGATGTTAATTATTATGGGATTGC
AGGTTGTAATCCGTGCTCCGATTATGGCCGTGTGGGCTATATTGAAAATAACAGGGAAGGCCTGGGAATGGACGGCTGCG
ACAGGTATTGCGGTTGCCTTCCTATGTGTGTTGATTGCCATCGTAGTCTTGGTGGCATTACCAAAGTTCAGGGTCATTCA
ATCTTTGACAGACCAATTGAACCGGGTAACAAGAGAGAATTTGTCGGGTATCCGAGTCGTCCGTGCCTACAATGCGGAAG
GGTATCAGGAAGAAAAATTTGAGCAGGCGAATAATGTATTGACCAAAACAAATCTATTCACAGGTCGGACGATGGCCATC
TTGTTCCCATCCATCGGGCTCATGATGTCTGGGATGAACCTTGCCATCTATTGGATTGGGGCCGTGTTAATTAATAATGC
TCCGATGGTGGATCGATTATCCCGGTTTTCCGACATGGTCGTTTTCTCCTCTTACGCCATGCAGATTATCATGTCCTTTA
TGATGCTGTCGATGGTGTTTATCATGATGCCGCGTGCAGCCGTTTCGGCAAAAAGGATTAATGAGGTGCTGGATACTGAG
GTCAAAATTGAAGATGGAAATGCAAAGGATACCGAAAAAGTCACAGGTGTAGGAGAAGTTGAATTCCGCAATGTTAGCTT
TAAATATCCAGATGCAGAAGATTATGTATTAAAAAATGTAAGTTTTAAAGCCCATCAGGGGGAAACAGTCGCCATCATCG
GATCTACAGGCAGCGGAAAAAGCACACTTCTAAACCTGGTTCCACGGTTCATGGATACATCCAAAGGAGAAGTGCTCATT
GACGGTGTCGATGTGAAGAAATACTCCCTGGAAGCCTTAAGAAATAAGCTGGGATATGTATCCCAAAAAGCGATCATGTT
CAGCGGCAGCGTTGCTTCGAATGTGGCATTTGGTGAAGTAGAGAACAAACCCGTAAGTGATATTGAAAGAGCAGTTGATA
TAGCACAGGGGAAAGAGTTTGTAGAAAAAATGGAAGGCCAGTATGAGGCAGAAATAGCTCAGGGAGGAACGAATATCTCG
GGAGGCCAGAAACAAAGATTATCCATTGCCCGTTCCATTTATAAAAACCCAGAAATTTATTTGTTCGATGATTCTTTTTC
GGCCTTGGATTATAAGACCGACCGGATCCTGCGTTCACGCCTAAAAAAAGAGATTAAAGATGCTACCTCCATCATTGTTG
CGCAGCGGATTGGGACCATTATTGATGCGGACCGCATAATTGTCCTTGATCAGGGCGAAGTGGCAGGCATCGGTACACAC
CAGGAGCTTATGAGAACATGTAACGTCTATCAAGAAATTGCTTACTCGCAATTGTCAAAGGAGGAGCTGGAAGTTGGCTG
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-505)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.156

100

0.546