Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   L1994_RS04870 Genome accession   NZ_CP091092
Coordinates   977281..978297 (+) Length   338 a.a.
NCBI ID   WP_278100558.1    Uniprot ID   A0AAF0FWR0
Organism   Methanomicrobium antiquum strain DSM 21220     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 972281..983297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1994_RS04855 (L1994_04840) - 972628..973236 (+) 609 WP_278100556.1 hypothetical protein -
  L1994_RS11900 - 973256..976360 (+) 3105 WP_341275808.1 ATPase, T2SS/T4P/T4SS family -
  L1994_RS04865 (L1994_04850) epdJ 976353..977276 (+) 924 WP_278100557.1 type II secretion system F family protein Machinery gene
  L1994_RS04870 (L1994_04855) epdK 977281..978297 (+) 1017 WP_278100558.1 type II secretion system F family protein Machinery gene
  L1994_RS04875 (L1994_04860) - 978777..979607 (-) 831 WP_278100559.1 PAS domain-containing protein -
  L1994_RS04880 (L1994_04865) - 979890..980195 (-) 306 WP_278100560.1 ferritin family protein -
  L1994_RS04885 (L1994_04870) - 980310..980753 (+) 444 WP_278100561.1 hypothetical protein -
  L1994_RS04890 (L1994_04875) - 980808..981416 (-) 609 WP_278100562.1 phosphoribosylanthranilate isomerase -
  L1994_RS04895 (L1994_04880) xth 981564..982337 (+) 774 WP_278100563.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37389.60 Da        Isoelectric Point: 6.5160

>NTDB_id=647618 L1994_RS04870 WP_278100558.1 977281..978297(+) (epdK) [Methanomicrobium antiquum strain DSM 21220]
MSIFKKKDTGEDKNIKSKDDEQQEEILEKIEVRRKKSEGFNRIFEHPFLVLTEKPENILLVSIPLALLFFLGGVTTTVMQ
YGLISLIKSTFIDDLFVFALIIALLPFTILDLKEAMRRRSIETALPNFFRDVAGMNESGMTLPNAISTVSNGDYGKLTSY
IKKMNNEISWNIPFIEAIFRFGESLGTPLAKRSVDLVAKASLAGGNVSEVLKAAANDSYEFINLADERRNNMMIYVVIVL
VSFLVFMGVIAIMTSTFLETMANAGSAVQGSGSSGQSLSFGGNLDMDLYRRIFTHASLIQGFFSGLVAGQMGEGRAVAGL
KYSIIMMAIAWVAFRFII

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=647618 L1994_RS04870 WP_278100558.1 977281..978297(+) (epdK) [Methanomicrobium antiquum strain DSM 21220]
ATGAGTATTTTTAAGAAAAAAGACACTGGAGAAGATAAGAATATAAAAAGTAAAGATGATGAGCAACAGGAAGAAATTCT
TGAGAAAATAGAAGTCAGGAGAAAAAAGAGCGAAGGTTTTAACCGGATATTTGAGCACCCTTTTTTGGTTTTAACTGAAA
AACCGGAGAATATTCTTCTCGTGTCAATTCCACTTGCTCTTTTATTCTTTTTAGGAGGAGTTACAACCACAGTAATGCAG
TACGGGTTAATCTCTCTAATAAAATCTACATTTATTGATGATTTATTTGTATTTGCACTTATCATTGCACTTTTGCCCTT
CACAATTCTGGATTTAAAAGAAGCAATGCGCAGAAGAAGTATTGAGACTGCTCTTCCAAATTTTTTCAGAGATGTTGCAG
GAATGAATGAGAGCGGGATGACTCTTCCAAATGCAATCAGCACAGTCTCAAACGGGGATTATGGAAAACTCACTTCATAT
ATCAAAAAAATGAATAATGAAATTTCATGGAATATTCCTTTTATTGAGGCAATTTTCAGATTTGGTGAGAGTCTTGGAAC
ACCTCTTGCAAAAAGGAGTGTTGATCTTGTTGCAAAGGCAAGTTTAGCCGGAGGAAATGTGAGCGAAGTCTTAAAAGCCG
CTGCAAACGATTCTTATGAGTTCATCAATCTGGCAGATGAACGAAGAAACAATATGATGATTTATGTGGTGATTGTACTG
GTGTCATTTCTTGTCTTTATGGGTGTAATTGCAATTATGACAAGCACTTTTCTTGAAACAATGGCAAATGCAGGTTCTGC
TGTCCAGGGCTCAGGCAGTTCAGGTCAGTCTCTTTCTTTTGGAGGGAATCTGGATATGGACTTATATAGACGTATATTTA
CACATGCATCATTAATTCAGGGGTTCTTCTCAGGTCTTGTGGCAGGTCAGATGGGTGAAGGCAGAGCTGTTGCCGGATTG
AAATATTCTATTATCATGATGGCTATTGCGTGGGTCGCTTTCAGATTTATTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(128-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

59.744

92.604

0.553