Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   L1994_RS04865 Genome accession   NZ_CP091092
Coordinates   976353..977276 (+) Length   307 a.a.
NCBI ID   WP_278100557.1    Uniprot ID   A0AAF0FQH2
Organism   Methanomicrobium antiquum strain DSM 21220     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971353..982276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1994_RS04850 (L1994_04835) - 971488..972279 (-) 792 WP_278100555.1 A24 family peptidase -
  L1994_RS04855 (L1994_04840) - 972628..973236 (+) 609 WP_278100556.1 hypothetical protein -
  L1994_RS11900 - 973256..976360 (+) 3105 WP_341275808.1 ATPase, T2SS/T4P/T4SS family -
  L1994_RS04865 (L1994_04850) epdJ 976353..977276 (+) 924 WP_278100557.1 type II secretion system F family protein Machinery gene
  L1994_RS04870 (L1994_04855) epdK 977281..978297 (+) 1017 WP_278100558.1 type II secretion system F family protein Machinery gene
  L1994_RS04875 (L1994_04860) - 978777..979607 (-) 831 WP_278100559.1 PAS domain-containing protein -
  L1994_RS04880 (L1994_04865) - 979890..980195 (-) 306 WP_278100560.1 ferritin family protein -
  L1994_RS04885 (L1994_04870) - 980310..980753 (+) 444 WP_278100561.1 hypothetical protein -
  L1994_RS04890 (L1994_04875) - 980808..981416 (-) 609 WP_278100562.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34506.06 Da        Isoelectric Point: 4.7646

>NTDB_id=647617 L1994_RS04865 WP_278100557.1 976353..977276(+) (epdJ) [Methanomicrobium antiquum strain DSM 21220]
MNSYERFCFNLLGERVQKKRDDYSSLRNEMLKARMKISFEAYLSTAYVSSVFAGFFMAAIIGMITFIFRLPELIVYRGNL
PDIFYELSQFSLIIGTILTIIISLIIFGGITYAIFLVYPSILSSDRKRNIDATLPYAINYITAMSTAGITPAEVFKLLGE
SEIYGESAVEARYITREVEIFGKDLLEALRTAGQYTPSDRMRDFLQGCVASISSGSNLTEYFRNKSEQYTRENRLEQKTF
LETLGLISESYVTALVAGTLFLIILQSIMSSISGDSNPVFLYAVIYGIIPLGSIMFVILIDSMTPEA

Nucleotide


Download         Length: 924 bp        

>NTDB_id=647617 L1994_RS04865 WP_278100557.1 976353..977276(+) (epdJ) [Methanomicrobium antiquum strain DSM 21220]
ATGAATAGTTACGAACGGTTCTGCTTTAATCTTCTTGGTGAAAGAGTACAAAAAAAAAGAGATGACTATAGTTCTCTTCG
GAATGAAATGCTTAAAGCCAGAATGAAAATTTCATTTGAAGCATATCTTTCAACAGCATATGTAAGTTCAGTTTTTGCCG
GATTTTTTATGGCGGCAATAATTGGTATGATTACTTTTATCTTCAGACTTCCTGAACTTATTGTTTACAGAGGAAATTTA
CCTGATATTTTTTACGAATTAAGTCAGTTCAGTCTTATAATCGGAACAATTTTAACAATAATAATATCTCTGATTATCTT
TGGAGGCATTACATATGCAATATTTCTGGTTTATCCGAGCATTCTTTCAAGCGACAGAAAACGAAATATTGATGCAACAC
TTCCGTATGCAATTAACTATATTACTGCAATGTCAACTGCCGGAATCACTCCGGCAGAGGTTTTCAAACTTCTTGGTGAA
AGTGAAATTTATGGGGAAAGTGCGGTTGAGGCACGCTATATCACAAGAGAGGTTGAAATATTTGGAAAAGATCTTCTTGA
GGCCTTAAGAACAGCAGGACAATACACTCCCAGTGACAGGATGAGGGATTTTTTGCAGGGTTGTGTTGCAAGTATCTCAA
GCGGCAGTAACCTAACAGAATACTTTAGAAATAAGTCCGAGCAGTACACCCGTGAAAACAGACTTGAGCAGAAAACTTTT
CTGGAAACTCTCGGACTTATTTCAGAATCATATGTGACTGCACTTGTAGCAGGAACTTTATTTTTAATAATTCTTCAGTC
AATTATGTCATCAATCAGCGGTGATTCAAATCCCGTTTTCTTATATGCCGTTATATACGGGATAATTCCTCTTGGCAGTA
TAATGTTTGTGATATTAATTGATTCGATGACTCCGGAGGCCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

68.627

99.674

0.684