Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG381_RS33830 Genome accession   NZ_CP107869
Coordinates   7392366..7393049 (+) Length   227 a.a.
NCBI ID   WP_327719784.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7387366..7398049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS33810 (OG381_33830) - 7387447..7387677 (-) 231 WP_046257057.1 hypothetical protein -
  OG381_RS33815 (OG381_33835) - 7388119..7390239 (+) 2121 WP_327719780.1 DNA topoisomerase IV subunit B -
  OG381_RS33820 (OG381_33840) - 7390697..7391221 (+) 525 WP_327719781.1 DUF1453 domain-containing protein -
  OG381_RS33825 (OG381_33845) - 7391218..7392369 (+) 1152 WP_327719783.1 histidine kinase -
  OG381_RS33830 (OG381_33850) vraR 7392366..7393049 (+) 684 WP_327719784.1 response regulator transcription factor Regulator
  OG381_RS33835 (OG381_33855) - 7393119..7393679 (+) 561 WP_327719785.1 DUF485 domain-containing protein -
  OG381_RS33840 (OG381_33860) - 7393676..7395268 (+) 1593 WP_327719786.1 cation acetate symporter -
  OG381_RS33845 (OG381_33865) - 7395350..7396030 (-) 681 WP_046257064.1 response regulator -
  OG381_RS33850 (OG381_33870) - 7396030..7397691 (-) 1662 WP_327719787.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24276.62 Da        Isoelectric Point: 5.1525

>NTDB_id=647588 OG381_RS33830 WP_327719784.1 7392366..7393049(+) (vraR) [Streptomyces sp. NBC_00490]
MTQEVQGRTARVVVADDQTVVREGIVMLLGLLPGVEVVGAAGDGDEAVRLVAELAPDVVLMDLRMPRCDGVEATRRIRTE
HPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVHSVLSGDAGLSPSIQRRLLERLSDPEQQSAEPVEAPD
GLTGRETEVLVLIADGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYAKGLVRPPAG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=647588 OG381_RS33830 WP_327719784.1 7392366..7393049(+) (vraR) [Streptomyces sp. NBC_00490]
ATGACGCAGGAGGTCCAGGGCAGGACCGCGCGGGTGGTGGTCGCTGACGACCAGACCGTCGTCCGGGAGGGCATCGTGAT
GCTGCTCGGGTTGCTGCCCGGTGTCGAGGTCGTCGGCGCGGCGGGCGACGGGGACGAGGCGGTGCGGCTCGTGGCCGAAC
TCGCCCCGGACGTGGTGCTGATGGACCTGCGCATGCCCCGCTGCGACGGCGTGGAGGCGACCCGGCGGATCCGGACCGAG
CACCCTGGCACCCAGGTGGTGGTGCTCACCACGTACGCGGACGACGAGTCGCTGTTCCCGGCGCTGCGAGCCGGGGCGCG
CGGTTATCTGACGAAGGACGCGGGTGGGGACGAGATCGTCAGGGCGGTGCACAGTGTGCTGTCCGGGGACGCCGGGTTGT
CGCCGAGCATCCAGCGGCGGTTGCTGGAGCGGTTGTCGGACCCCGAGCAGCAGTCGGCCGAGCCGGTGGAGGCGCCGGAC
GGGCTCACGGGACGGGAGACCGAGGTGCTGGTGCTGATCGCCGATGGGCTCAGCAACCAGGAGATCGCCAGAAGGCTGCA
TGTCTCCACCGCGACCGTGAAGACGCACATCAACAACCTGTTCGCCAAGACGGGGCTCAAGGACCGGGCGCAGGCGGTGC
GTTACGCGTACGCGAAGGGACTTGTGCGGCCTCCGGCGGGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

94.714

0.37
  degU Bacillus subtilis subsp. subtilis str. 168

37.387

97.797

0.366