Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L1P09_RS18535 Genome accession   NZ_CP091088
Coordinates   3980483..3982696 (-) Length   737 a.a.
NCBI ID   WP_235767972.1    Uniprot ID   -
Organism   Pseudomonas juntendi strain PP_2463     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3975483..3987696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P09_RS18500 (L1P09_18500) murB 3975768..3976787 (-) 1020 WP_235767971.1 UDP-N-acetylmuramate dehydrogenase -
  L1P09_RS18505 (L1P09_18505) - 3976784..3977248 (-) 465 WP_054905783.1 low molecular weight protein-tyrosine-phosphatase -
  L1P09_RS18510 (L1P09_18510) kdsB 3977248..3978012 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L1P09_RS18515 (L1P09_18515) - 3978009..3978194 (-) 186 WP_003247142.1 Trm112 family protein -
  L1P09_RS18520 (L1P09_18520) lpxK 3978238..3979239 (-) 1002 WP_054905781.1 tetraacyldisaccharide 4'-kinase -
  L1P09_RS18525 (L1P09_18525) - 3979239..3979673 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  L1P09_RS18530 (L1P09_18530) exbB 3979670..3980305 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L1P09_RS18535 (L1P09_18535) comA 3980483..3982696 (-) 2214 WP_235767972.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1P09_RS18540 (L1P09_18540) - 3982839..3983345 (+) 507 Protein_3647 DUF2062 domain-containing protein -
  L1P09_RS18545 (L1P09_18545) - 3983355..3984134 (-) 780 WP_009681883.1 ABC transporter permease -
  L1P09_RS18550 (L1P09_18550) - 3984131..3985063 (-) 933 WP_009681882.1 ABC transporter ATP-binding protein -
  L1P09_RS18555 (L1P09_18555) - 3985210..3985833 (-) 624 WP_054906176.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79455.18 Da        Isoelectric Point: 9.9256

>NTDB_id=647579 L1P09_RS18535 WP_235767972.1 3980483..3982696(-) (comA) [Pseudomonas juntendi strain PP_2463]
MRTGMLALALGLLCLGFLPVLPPDGWLWVLAACAGVCLFTRGWPLGCFLLGLCWASWSAQQALDDRLAAALDGRTLWLEG
RVVGLPARTAHGVRFELEAARSRRAELPQRLQVSWFDGPPVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPASYGWRDSLRQRLLAVDANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVVVLLVEPL
AALLPGFWLSFGAVATLVFCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGAGEALLWLAGGLLDVLFRVLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDIGQGLAVLLRTRHHNLLYDAGPARGDSDLGERVVLPTLRKLGVSHLDVMLISHAHADHAGGAG
AIQRGLPVERVIGGEALDDVQLQPCASGEQWEWDGVGFSLWRWADGRSSNDRSCVLLVEAQGERLLLAGDMEVGAERAWL
AATDAPRIDWLQSPHHGSRSSSSEGFMRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVHDTAVQGALRLVLGGWG
EVEGMRGQRRFWRARVE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=647579 L1P09_RS18535 WP_235767972.1 3980483..3982696(-) (comA) [Pseudomonas juntendi strain PP_2463]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTGTGCCTGGGCTTTCTTCCTGTATTGCCACCGGACGGGTGGTT
GTGGGTGCTGGCGGCTTGCGCTGGCGTCTGCCTGTTCACCCGCGGGTGGCCATTGGGCTGTTTTCTGTTGGGGCTGTGCT
GGGCCAGCTGGTCTGCCCAGCAGGCCCTGGATGACCGGCTGGCGGCCGCTTTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGGCACGCACGGCGCACGGTGTGCGTTTCGAGCTGGAGGCCGCCCGTTCGCGCCGTGCCGAATT
GCCACAACGCCTGCAAGTCAGCTGGTTCGACGGGCCGCCGGTACGGGCCGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCCGCCGGGTTGTTGAACCCGCATGGGCCGGACCGTGAAGCGCAGTTGCTGGCCCGGCGGGTCGGCGCTACCGGT
ACGGTGAAGGCGGGGCAGCTGCTGGCGCCGGCCAGCTATGGGTGGCGGGACTCGCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCCGCGCTGGTGGCCCTGGTGCTCGGCGACGGGACCGGCCTGGCGCGGGAAGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACTTGTTGGTCATTTCCGGCCAGCACATTGGCCTGGTTGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGTTGGCCCGCTGGGGGCTGTGGCCCGCACGGCTGCCGTGGCTGCCCTCGGCGTGCGCGCTGGCCATGGGTGC
GGCACTGGCCTACGGCTGGCTGGCCGGCGCGGGGGTGCCGGTACAGCGTGCCTGTCTGATGCTGGCCGTGGTGTTGCTCT
GGCGGCTGCGTTTTCGGCACCTGGGGGCGTTCCTGCCACTGTTGCTGGCGCTGGTGGTCGTGTTGCTGGTCGAGCCGCTG
GCGGCGCTGCTTCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGCCACGCTGGTGTTTTGCTTCAGCGCCCGCTTGGGGGC
ATGGCGGCCATGGCAGGCCTGGACGCGGGCGCAGTGGGTGATTGCCATCGGTTTGTTGCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTGGTGGCGGTGCCATGGGTGAGCCTGGCGGTACTGCCGTTGGCCTTG
CTGGGTACCTTGTTGTTGCCGTTGGGTGGGGCTGGGGAGGCCTTGTTGTGGCTGGCAGGTGGCTTGCTGGACGTGCTGTT
TCGGGTGCTGGCGCTGGTTGCGCAGCAACGCCCGGCATGGGTGCCGCCGGCCCTGCCGCTATGGGCCTGGCTGCTGGTCT
GCCTGGGGGCTTTGCTGGTGCTGCTGCCCCGTGGCGTGCCGCTGAGAGGGTTGGGCGGGGTGATGCTGTTGGCCCTTTGG
GTGCCGCGCGAGCCGGTGCCTTTCGGGCAGGTGGAGGTCTGGCAGCTGGACATTGGCCAAGGCTTGGCGGTGCTGTTGCG
CACCCGGCATCACAACCTGCTGTATGACGCCGGGCCGGCGAGGGGCGACAGCGACCTGGGGGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGTTGGGGGTGAGTCACCTGGACGTGATGCTGATCAGCCATGCCCACGCCGATCATGCCGGCGGTGCTGGG
GCGATACAGCGGGGTTTGCCGGTCGAGCGGGTTATCGGTGGGGAAGCGCTGGATGATGTTCAGTTGCAACCCTGTGCCAG
TGGCGAGCAATGGGAATGGGATGGCGTGGGTTTTTCGCTGTGGCGCTGGGCGGATGGGCGCAGCAGTAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCCGGCGACATGGAGGTAGGGGCGGAGCGTGCCTGGCTG
GCGGCGACCGACGCGCCACGCATTGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCCTCCAGCGAGGGGTTCAT
GCGTGCCACGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGCAATAATAGCTTTGGACACCCGCATGCGCAGGTGGTGG
AGCGGTACCGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGCAGGGGGCTTTGCGGTTGGTGCTGGGTGGGTGGGGG
GAGGTTGAGGGGATGCGGGGACAGCGGCGGTTCTGGCGGGCTCGGGTGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-649)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.506

98.1

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.43

100

0.374