Detailed information NTG0647570

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1P09_RS03105
• Genome accession: NZ_CP091088
• Coordinates: 676679..677545 (-)
• Length: 288 a.a.
• NCBI ID: WP_033690441.1
• Uniprot ID: A0AAJ5S307
• Organism: Pseudomonas juntendi strain PP_2463
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 671679..682545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1P09_RS03075 (L1P09_03075)	-	672675..673970 (-)	1296	WP_009683004.1	NAD(P)/FAD-dependent oxidoreductase	-
L1P09_RS03080 (L1P09_03080)	-	674055..674228 (-)	174	WP_033744188.1	DUF3094 family protein	-
L1P09_RS03085 (L1P09_03085)	-	674362..674991 (-)	630	WP_009683003.1	DUF1780 domain-containing protein	-
L1P09_RS03090 (L1P09_03090)	-	675124..675807 (+)	684	WP_235768937.1	energy-coupling factor ABC transporter permease	-
L1P09_RS03095 (L1P09_03095)	yacG	675859..676059 (-)	201	WP_009683001.1	DNA gyrase inhibitor YacG	-
L1P09_RS03100 (L1P09_03100)	coaE	676056..676679 (-)	624	WP_235768448.1	dephospho-CoA kinase	-
L1P09_RS03105 (L1P09_03105)	pilD	676679..677545 (-)	867	WP_033690441.1	A24 family peptidase	Machinery gene
L1P09_RS03110 (L1P09_03110)	-	677548..678756 (-)	1209	WP_235768449.1	type II secretion system F family protein	-
L1P09_RS03115 (L1P09_03115)	-	678972..679382 (+)	411	WP_235768450.1	pilin	-
L1P09_RS03125 (L1P09_03125)	-	679724..680362 (+)	639	WP_235768451.1	hypothetical protein	-
L1P09_RS03130 (L1P09_03130)	-	680365..680982 (-)	618	WP_235768452.1	recombinase family protein	-
L1P09_RS03135 (L1P09_03135)	-	681100..682068 (+)	969	WP_235768453.1	hypothetical protein	-
L1P09_RS03140 (L1P09_03140)	-	682077..682523 (-)	447	Protein_595	tail assembly protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31740.91 Da
• Isoelectric Point: 8.0860

>NTDB_id=647570 L1P09_RS03105 WP_033690441.1 676679..677545(-) (pilD) [Pseudomonas juntendi strain PP_2463]
MTLWTLLAEQPAYFYTLASVLGLLVGSFLNVLVYRLPIMLERQWQREAQQVLGLPTTQHPRFDLCLPASRCPQCAHPIRP
WQNIPVLSYLALRGRCSACKARISPRYPLVEVASALLSLLVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFAVYVPLGSAVWGAVAGYLCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLHLHRHALGAAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=647570 L1P09_RS03105 WP_033690441.1 676679..677545(-) (pilD) [Pseudomonas juntendi strain PP_2463]
ATGACTTTATGGACCTTGCTGGCTGAACAGCCGGCGTACTTCTACACCTTGGCGAGCGTGCTCGGCTTGCTGGTAGGCAG
CTTTCTGAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAAGCGCAGCAGGTTCTGGGGC
TGCCGACTACGCAGCACCCGCGCTTCGACCTGTGCCTGCCCGCTTCGCGCTGCCCGCAGTGCGCACACCCGATTCGCCCG
TGGCAAAACATTCCAGTGCTCAGCTACCTGGCCTTGCGTGGGCGCTGCTCTGCCTGCAAGGCCCGCATCAGCCCGCGTTA
CCCACTGGTGGAAGTGGCCAGTGCGCTGCTGTCGCTGCTGGTGGCCTGGCGTTTTGGTGCGTCAGCCGAGGCATTGCTGG
CATTGCCCTTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGATCACCAGCTGTTGCCGGACGTACTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGCCGTGTATGTGCCGCTGGGCAGTGCGGTATGGGGGGCGGTGGC
GGGTTACCTCTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCA
AGCTGATGGCGCTGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGTTGGCCTGTGCTTGTTGCATTTGCACCGGCACGCACTAGGCGCGGCGATGCCGTTTGGCCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTGGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Acinetobacter baumannii D1279779	52.03	94.097	0.49
pilD	Acinetobacter nosocomialis M2	51.292	94.097	0.483
pilD	Vibrio campbellii strain DS40M4	49.638	95.833	0.476
pilD	Neisseria gonorrhoeae MS11	50.189	92.014	0.462