Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG381_RS26380 Genome accession   NZ_CP107869
Coordinates   5795395..5796804 (-) Length   469 a.a.
NCBI ID   WP_327718550.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5790395..5801804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS26355 (OG381_26365) - 5790467..5791195 (-) 729 WP_327718546.1 hypothetical protein -
  OG381_RS26360 (OG381_26370) - 5791180..5791722 (-) 543 WP_046263315.1 SigE family RNA polymerase sigma factor -
  OG381_RS26365 (OG381_26375) - 5791961..5792896 (-) 936 WP_327718547.1 A/G-specific adenine glycosylase -
  OG381_RS26370 (OG381_26380) - 5793251..5794084 (+) 834 WP_327718548.1 hypothetical protein -
  OG381_RS26375 (OG381_26385) disA 5794189..5795313 (-) 1125 WP_327718549.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG381_RS26380 (OG381_26390) radA/sms 5795395..5796804 (-) 1410 WP_327718550.1 DNA repair protein RadA Machinery gene
  OG381_RS26385 (OG381_26395) - 5797003..5798685 (+) 1683 WP_327718551.1 hypothetical protein -
  OG381_RS26390 (OG381_26400) - 5798694..5799545 (-) 852 WP_327718552.1 hypothetical protein -
  OG381_RS26395 (OG381_26405) - 5799617..5800558 (+) 942 WP_327718553.1 Ppx/GppA phosphatase family protein -
  OG381_RS26400 (OG381_26410) - 5800662..5801486 (+) 825 WP_307027598.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49668.81 Da        Isoelectric Point: 7.7220

>NTDB_id=647562 OG381_RS26380 WP_327718550.1 5795395..5796804(-) (radA/sms) [Streptomyces sp. NBC_00490]
MAARTKTAKDRPAYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADIGEALRVLPRSRRRDAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=647562 OG381_RS26380 WP_327718550.1 5795395..5796804(-) (radA/sms) [Streptomyces sp. NBC_00490]
ATGGCTGCCCGTACGAAGACCGCCAAGGACCGACCCGCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACCGTCGAGGAGTACGGCGCGCCCGCGGTGCGTACGACGGCCCCGGGCC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGCACGGCCACCGCCCGCTCCACCGGCGTACCCGAGCTG
GACCGGGTGCTCGGCGGCGGACTCGTACCCGGCGCGGTCGTCCTGCTGGCGGGCGAGCCCGGCGTGGGAAAGTCGACCCT
GCTCCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTACCTCGCCGCGGAGACCGACCTGGCCGCGGTCCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCCGTCCAGACGATCGCGTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCGGGCGCCCTCATCCGCGCCTCCAAGGACCGCGGCATGTCCACCCTCC
TCGTCGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGTCTGCTGGAGCACCTCGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGGCTGGTCCGCGGCGTCAAGAACCGGTACGGAGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATTACCGGCCTTACCGACCCGAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCCCTCACCGTCGACTCGCAGATC
CCCTCGCCCCGCCGCACGACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGGGGCAG
GATCAGCGCACTCGGCAAGAGGGACATCTACTCCGCGACGGTCGGCGGAGTGAAGCTGTCGGAGCCGGCCGCGGACCTCG
CCATCGCCCTCGCGCTGGCGTCTGCGGCGAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTAGGCCTT
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCCGGCTCGCCGAGGCACACCGTCTGGGCTTCACCCACGCGCTCGT
GCCGGGCGACCCGGGCAAGATCCCCGCCGGTATGAAGGTCCTGGAAGTCGCCGACATAGGAGAGGCTCTGAGGGTCCTTC
CGCGGTCGCGTCGGCGAGACGCCCCACGGGACGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus mitis SK321

43.488

96.588

0.42
  radA Streptococcus mitis NCTC 12261

43.488

96.588

0.42
  radA Streptococcus pneumoniae Rx1

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.556

95.949

0.418
  radA Streptococcus pneumoniae D39

43.556

95.949

0.418
  radA Streptococcus pneumoniae R6

43.556

95.949

0.418