Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1S38_RS22540 Genome accession   NZ_CP091081
Coordinates   4578121..4579641 (+) Length   506 a.a.
NCBI ID   WP_059359166.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain GD21SC1505     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4573121..4584641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S38_RS22515 (L1S38_22515) ilvE 4574688..4575617 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  L1S38_RS22520 (L1S38_22520) ilvM 4575636..4575899 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  L1S38_RS22525 (L1S38_22525) ilvG 4575896..4577542 (-) 1647 WP_250670205.1 acetolactate synthase 2 catalytic subunit -
  L1S38_RS22530 (L1S38_22530) ilvX 4577545..4577595 (-) 51 WP_192930497.1 peptide IlvX -
  L1S38_RS22535 (L1S38_22535) ilvL 4577682..4577780 (-) 99 WP_071996002.1 ilv operon leader peptide -
  L1S38_RS22540 (L1S38_22540) comM 4578121..4579641 (+) 1521 WP_059359166.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1S38_RS22545 (L1S38_22545) - 4579672..4580010 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  L1S38_RS22550 (L1S38_22550) hdfR 4580129..4580950 (+) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54892.84 Da        Isoelectric Point: 7.1543

>NTDB_id=647561 L1S38_RS22540 WP_059359166.1 4578121..4579641(+) (comM) [Enterobacter roggenkampii strain GD21SC1505]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRERVIAAQARQYTRQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=647561 L1S38_RS22540 WP_059359166.1 4578121..4579641(+) (comM) [Enterobacter roggenkampii strain GD21SC1505]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTTATCGCCGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTATAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGTTCGGCATCGTTGCATAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATTTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCTGCGCAATTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGAGCGGGTGATCGCTGCCCAGGCACGACAATACACCCGCCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAATAGTGAAGATGCAGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTATCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439