Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L1O02_RS04570 Genome accession   NZ_CP091067
Coordinates   972730..974058 (-) Length   442 a.a.
NCBI ID   WP_108546220.1    Uniprot ID   -
Organism   Pseudomonas sp. BC42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 967730..979058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O02_RS04535 (L1O02_04535) - 968145..968669 (-) 525 WP_060841161.1 GspH/FimT family protein -
  L1O02_RS04540 (L1O02_04540) pilV 969071..969514 (+) 444 WP_108546215.1 type IV pilus modification protein PilV -
  L1O02_RS04545 (L1O02_04545) - 969511..970221 (+) 711 WP_108546216.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L1O02_RS04550 (L1O02_04550) - 970221..970703 (+) 483 WP_232513182.1 PilX N-terminal domain-containing pilus assembly protein -
  L1O02_RS04555 (L1O02_04555) - 970690..971160 (+) 471 WP_108546217.1 hypothetical protein -
  L1O02_RS04560 (L1O02_04560) - 971176..971577 (+) 402 WP_108546218.1 type IV pilin protein -
  L1O02_RS04565 (L1O02_04565) thiO 971633..972733 (+) 1101 WP_108546219.1 glycine oxidase ThiO -
  L1O02_RS04570 (L1O02_04570) pilR 972730..974058 (-) 1329 WP_108546220.1 sigma-54 dependent transcriptional regulator Regulator
  L1O02_RS04575 (L1O02_04575) - 974314..974547 (-) 234 WP_060841153.1 PP0621 family protein -
  L1O02_RS04580 (L1O02_04580) - 974675..975697 (-) 1023 WP_060841152.1 outer membrane protein assembly factor BamD -
  L1O02_RS04585 (L1O02_04585) rluD 975848..976810 (+) 963 WP_016964308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1O02_RS04590 (L1O02_04590) pgeF 976807..977532 (+) 726 WP_060841151.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49665.16 Da        Isoelectric Point: 8.5246

>NTDB_id=647472 L1O02_RS04570 WP_108546220.1 972730..974058(-) (pilR) [Pseudomonas sp. BC42]
MNPQHRALVVDETREIRSVLEITLGRMRLHTQSARSLQEARSHLAREHFDLCLTDLHLPDGSGLELLQHIRRHHPQLPVA
LLSHEACAPTSALDAETCDLLPKPLDLKRLRDWVATALKRQHSGVATRFSEQLPGDSPPMVILRRHIAKLAASLAPLYIS
GESGSGKERVARLIHQSGPRAAQPFVPVNCGAIPGELMESEFFGHRKGSFSGALMDQPGLFRAAHGGTLFLDEIADLPLV
MQVKLLRTLQEKSVRSVGAQEEQAVDVRILCATHKDLKSEVQAGRFRQDLFYRLNVIELRVPALRERRDDIGLLARHILQ
RLAASSGRPAPQLHPQALQALERYDFPGNVRELENLLERAQALCESPWIEVADLNLPAPEPENELPPGPALNLDLARHLQ
QVERQLLLQTLEQTRWNRTEAARRLSLSLRSMRYRMKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=647472 L1O02_RS04570 WP_108546220.1 972730..974058(-) (pilR) [Pseudomonas sp. BC42]
ATGAATCCACAGCACAGAGCGCTGGTGGTCGATGAGACCAGGGAAATCCGCTCTGTGCTGGAGATCACCCTGGGCCGCAT
GCGCCTGCACACCCAAAGCGCCCGCAGCCTGCAGGAGGCCCGCAGCCACCTGGCCCGGGAGCATTTCGACCTGTGCCTGA
CCGACCTGCACCTGCCGGACGGCAGCGGCCTGGAGCTGCTGCAGCATATTCGCCGGCACCATCCCCAACTGCCGGTGGCC
CTGCTCAGCCACGAGGCCTGCGCGCCAACCAGCGCCCTGGATGCCGAAACCTGCGACCTGCTGCCAAAGCCTCTGGACCT
CAAGCGCCTGCGGGACTGGGTGGCCACCGCCCTGAAACGACAACACTCGGGTGTGGCGACTCGCTTCTCTGAGCAACTGC
CGGGGGATTCGCCGCCCATGGTCATCCTGCGCCGGCATATTGCCAAACTGGCCGCCAGCCTCGCGCCGCTCTACATCAGC
GGCGAGTCCGGCAGCGGCAAGGAACGAGTGGCCCGATTGATCCACCAGTCAGGCCCCAGAGCCGCACAGCCCTTTGTCCC
GGTCAACTGCGGAGCGATTCCCGGCGAACTGATGGAGAGCGAGTTTTTCGGTCACCGCAAGGGCAGCTTCAGCGGCGCCC
TGATGGATCAGCCCGGACTGTTCCGGGCCGCTCATGGCGGCACCCTGTTCCTTGACGAGATCGCCGACCTGCCGCTGGTC
ATGCAGGTGAAACTGCTGCGAACCTTGCAGGAAAAGTCAGTGCGCTCAGTAGGCGCTCAGGAAGAACAGGCGGTGGATGT
ACGAATCCTCTGTGCGACCCACAAGGATCTGAAAAGCGAAGTGCAAGCCGGACGCTTTCGCCAGGACCTGTTTTATCGGC
TGAATGTCATCGAGTTGCGGGTTCCCGCCCTGCGCGAACGTCGGGACGATATCGGGCTACTGGCCCGGCACATCCTCCAG
CGTCTGGCCGCCAGCAGTGGCCGGCCAGCCCCACAGTTGCACCCACAAGCGCTGCAAGCCCTGGAGCGCTACGACTTCCC
CGGCAATGTGCGTGAACTGGAGAACCTGCTGGAACGGGCCCAGGCCCTTTGCGAGAGTCCGTGGATCGAGGTGGCAGACC
TGAACTTACCGGCACCCGAACCTGAGAACGAGCTCCCGCCGGGGCCCGCCCTCAATCTCGATCTGGCGCGGCACCTGCAG
CAGGTGGAGCGCCAGTTGCTGCTCCAGACCCTGGAGCAAACCCGCTGGAACCGCACGGAGGCGGCCCGGCGGTTGAGCCT
GTCGCTGCGTTCGATGCGCTATCGCATGAAGAAGCTCGGACTGGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-299)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(8-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.077

100

0.622
  pilR Acinetobacter baumannii strain A118

42.888

100

0.45