Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1O91_RS10275 Genome accession   NZ_CP091066
Coordinates   2099751..2100146 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UMCG579     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2094751..2105146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O91_RS10250 (L1O91_10250) thiE 2095350..2095991 (-) 642 WP_054190444.1 thiamine phosphate synthase -
  L1O91_RS10255 (L1O91_10255) thiM 2095993..2096784 (-) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  L1O91_RS10260 (L1O91_10260) thiD 2096768..2097598 (-) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L1O91_RS10265 (L1O91_10265) tenA 2097591..2098280 (-) 690 WP_054190447.1 thiaminase II -
  L1O91_RS10270 (L1O91_10270) sceD 2098667..2099362 (-) 696 WP_054190448.1 lytic transglycosylase SceD -
  L1O91_RS10275 (L1O91_10275) ssb 2099751..2100146 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  L1O91_RS10280 (L1O91_10280) - 2100340..2100780 (+) 441 WP_000846746.1 YwpF-like family protein -
  L1O91_RS10285 (L1O91_10285) fabZ 2100838..2101278 (-) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  L1O91_RS10290 (L1O91_10290) murA 2101312..2102577 (-) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  L1O91_RS10295 (L1O91_10295) - 2102688..2102921 (-) 234 WP_000384523.1 DUF1146 family protein -
  L1O91_RS10300 (L1O91_10300) - 2103445..2103849 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=647459 L1O91_RS10275 WP_000932694.1 2099751..2100146(-) (ssb) [Staphylococcus aureus strain UMCG579]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=647459 L1O91_RS10275 WP_000932694.1 2099751..2100146(-) (ssb) [Staphylococcus aureus strain UMCG579]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992