Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L1O91_RS07565 Genome accession   NZ_CP091066
Coordinates   1589941..1590627 (-) Length   228 a.a.
NCBI ID   WP_077446658.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UMCG579     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584941..1595627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O91_RS07545 (L1O91_07545) rpsT 1585855..1586106 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  L1O91_RS07550 (L1O91_07550) holA 1586151..1587125 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  L1O91_RS07555 (L1O91_07555) comEC 1587182..1589383 (-) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1O91_RS07560 (L1O91_07560) - 1589388..1589849 (-) 462 WP_000439693.1 ComE operon protein 2 -
  L1O91_RS07565 (L1O91_07565) comEA 1589941..1590627 (-) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  L1O91_RS07570 (L1O91_07570) - 1590667..1591383 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  L1O91_RS07575 (L1O91_07575) rsfS 1591386..1591739 (-) 354 WP_001088020.1 ribosome silencing factor -
  L1O91_RS07580 (L1O91_07580) yqeK 1591740..1592324 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  L1O91_RS07585 (L1O91_07585) nadD 1592314..1592883 (-) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  L1O91_RS07590 (L1O91_07590) yhbY 1592886..1593176 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  L1O91_RS07595 (L1O91_07595) aroE 1593180..1593986 (-) 807 WP_054190052.1 shikimate dehydrogenase -
  L1O91_RS07600 (L1O91_07600) yqeH 1594000..1595100 (-) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.54 Da        Isoelectric Point: 9.3381

>NTDB_id=647447 L1O91_RS07565 WP_077446658.1 1589941..1590627(-) (comEA) [Staphylococcus aureus strain UMCG579]
MVLLYQFLLRYRDFLIQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=647447 L1O91_RS07565 WP_077446658.1 1589941..1590627(-) (comEA) [Staphylococcus aureus strain UMCG579]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAATTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956