Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   L1O91_RS02300 Genome accession   NZ_CP091066
Coordinates   501313..501882 (+) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UMCG579     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 496313..506882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O91_RS02275 (L1O91_02275) cysE 497526..498173 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  L1O91_RS02280 (L1O91_02280) cysS 498157..499557 (+) 1401 WP_054190482.1 cysteine--tRNA ligase -
  L1O91_RS02285 (L1O91_02285) - 499550..499954 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  L1O91_RS02290 (L1O91_02290) rlmB 499962..500708 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  L1O91_RS02295 (L1O91_02295) - 500708..501232 (+) 525 WP_000664738.1 NYN domain-containing protein -
  L1O91_RS02300 (L1O91_02300) sigH 501313..501882 (+) 570 WP_054190481.1 sigma-70 family RNA polymerase sigma factor Regulator
  L1O91_RS02305 (L1O91_02305) rpmG 501997..502140 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  L1O91_RS02310 (L1O91_02310) secE 502196..502378 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  L1O91_RS02315 (L1O91_02315) nusG 502391..502939 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  L1O91_RS02320 (L1O91_02320) rplK 503120..503542 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  L1O91_RS02325 (L1O91_02325) rplA 503750..504442 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  L1O91_RS02330 (L1O91_02330) rplJ 504714..505214 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  L1O91_RS02335 (L1O91_02335) rplL 505256..505624 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  L1O91_RS02340 (L1O91_02340) - 505799..506407 (+) 609 WP_054190480.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=647428 L1O91_RS02300 WP_054190481.1 501313..501882(+) (sigH) [Staphylococcus aureus strain UMCG579]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=647428 L1O91_RS02300 WP_054190481.1 501313..501882(+) (sigH) [Staphylococcus aureus strain UMCG579]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968