Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG561_RS44130 Genome accession   NZ_CP107865
Coordinates   10173888..10174559 (+) Length   223 a.a.
NCBI ID   WP_327727066.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00496     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10168888..10179559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG561_RS44105 (OG561_44195) - 10169320..10169706 (+) 387 WP_326575055.1 ribonuclease domain-containing protein -
  OG561_RS44110 (OG561_44200) - 10169804..10170007 (-) 204 WP_326575053.1 hypothetical protein -
  OG561_RS44115 (OG561_44205) - 10170210..10171469 (+) 1260 WP_327727068.1 histidine kinase -
  OG561_RS44120 (OG561_44210) - 10171835..10172671 (+) 837 WP_327727067.1 hypothetical protein -
  OG561_RS44125 (OG561_44215) - 10172704..10173732 (-) 1029 WP_326575047.1 aldo/keto reductase -
  OG561_RS44130 (OG561_44220) vraR 10173888..10174559 (+) 672 WP_327727066.1 response regulator transcription factor Regulator
  OG561_RS44135 (OG561_44225) - 10174698..10175888 (+) 1191 WP_327732086.1 cytochrome P450 -
  OG561_RS44140 (OG561_44230) - 10176167..10177177 (-) 1011 WP_326575043.1 Gfo/Idh/MocA family oxidoreductase -
  OG561_RS44145 (OG561_44235) - 10177307..10178044 (+) 738 WP_326585559.1 GntR family transcriptional regulator -
  OG561_RS44150 (OG561_44240) - 10178185..10179330 (+) 1146 WP_326575041.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23644.04 Da        Isoelectric Point: 4.9615

>NTDB_id=647402 OG561_RS44130 WP_327727066.1 10173888..10174559(+) (vraR) [Streptomyces sp. NBC_00496]
MTVIRLLLVDDDPLVRAGLSFMLGGADDIEIVGEGADGDEVDALVDRTRPDVVLMDIRMPTVDGLAATERLRTRADAPQV
VVLTTFHADDQVLRALRAGAAGFVLKDTPPAEIVAAVRRVAAGDPVLSPAVTRRLMAHAAGSAPDTRRATARSRVAALND
REREVAVAVGRGASNAEIAGELFLSVATVKTHVSRILAKLDLNNRVQIALLTYDAGLLEDDGR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=647402 OG561_RS44130 WP_327727066.1 10173888..10174559(+) (vraR) [Streptomyces sp. NBC_00496]
ATGACCGTGATCCGACTGCTCCTCGTCGACGACGACCCCCTCGTGCGCGCCGGACTCTCCTTCATGCTGGGCGGCGCCGA
CGACATCGAGATCGTGGGCGAGGGCGCCGACGGCGACGAGGTGGACGCCCTCGTCGACCGCACGCGCCCCGACGTCGTCC
TCATGGACATCCGGATGCCGACCGTCGACGGTCTCGCGGCCACCGAGCGGCTCCGCACCCGCGCGGACGCGCCCCAGGTC
GTCGTCCTCACCACCTTCCACGCCGACGACCAGGTCCTGCGCGCCCTGCGCGCGGGCGCCGCCGGCTTCGTCCTCAAGGA
CACCCCGCCCGCCGAGATCGTCGCGGCGGTACGGCGGGTCGCGGCCGGCGACCCCGTGCTCTCGCCCGCCGTCACCCGCC
GTCTGATGGCACACGCCGCCGGCAGCGCACCCGACACCCGGCGCGCCACCGCCCGTTCCCGCGTCGCCGCCCTCAACGAC
CGCGAACGCGAGGTGGCCGTCGCCGTCGGCCGCGGCGCCTCCAACGCCGAGATCGCCGGCGAACTCTTCCTGAGCGTGGC
CACCGTCAAGACCCACGTCTCCCGCATCCTCGCCAAACTCGACCTCAACAACCGTGTGCAGATCGCCCTGTTGACGTACG
ACGCGGGACTGCTGGAGGACGACGGGCGCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.443

98.206

0.368
  degU Bacillus subtilis subsp. subtilis str. 168

35.683

100

0.363