Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG561_RS43505 Genome accession   NZ_CP107865
Coordinates   10039181..10039861 (+) Length   226 a.a.
NCBI ID   WP_327727169.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00496     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10034181..10044861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG561_RS43490 (OG561_43580) - 10034547..10035980 (-) 1434 WP_327727171.1 DUF4157 domain-containing protein -
  OG561_RS43495 (OG561_43585) - 10036589..10038349 (+) 1761 WP_327727170.1 S8 family serine peptidase -
  OG561_RS43500 (OG561_43590) - 10038418..10038660 (-) 243 WP_326575242.1 hypothetical protein -
  OG561_RS43505 (OG561_43595) vraR 10039181..10039861 (+) 681 WP_327727169.1 response regulator transcription factor Regulator
  OG561_RS43510 (OG561_43600) - 10039886..10040095 (-) 210 WP_327727168.1 winged helix-turn-helix domain-containing protein -
  OG561_RS43515 (OG561_43605) - 10040117..10041439 (-) 1323 WP_327727167.1 HupE/UreJ family protein -
  OG561_RS43520 (OG561_43610) - 10041461..10042648 (-) 1188 WP_327727165.1 DUF3500 domain-containing protein -
  OG561_RS43525 (OG561_43615) - 10042849..10043550 (+) 702 WP_327727164.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24444.51 Da        Isoelectric Point: 6.8876

>NTDB_id=647400 OG561_RS43505 WP_327727169.1 10039181..10039861(+) (vraR) [Streptomyces sp. NBC_00496]
MVIRVVVVDDQDMVRSGFAAVLSMQSDIDVVGEAANGRLGIEVSRGTHPDVVLMDVRMPEMDGLEAARRLLDPPPGVVHR
PKVLMLTTFDLDDYVYEALQAGVSGFLLKDAPVAELIQAVRVIAAGDALLAPSVTRRLIEDVARRRPAVSHRKRLRLNGL
TPRETEVLLLVARGLSNAEIAATLVVAEQTVKTHMTRTLAKLGARDRAQLVVLAYESGLITPGMSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=647400 OG561_RS43505 WP_327727169.1 10039181..10039861(+) (vraR) [Streptomyces sp. NBC_00496]
ATGGTGATCCGGGTGGTCGTCGTGGACGACCAGGACATGGTGCGTTCGGGGTTCGCCGCGGTGCTGTCGATGCAGAGCGA
CATCGACGTCGTGGGGGAGGCCGCCAACGGCAGACTCGGCATCGAGGTCAGTCGCGGCACCCATCCCGACGTGGTGCTGA
TGGACGTACGGATGCCGGAGATGGACGGGCTGGAGGCCGCTCGGCGGCTGCTCGATCCGCCGCCAGGCGTGGTGCACCGG
CCCAAGGTGCTCATGCTGACCACCTTCGACCTCGACGACTACGTCTACGAGGCGCTCCAGGCCGGGGTGAGCGGCTTCCT
GCTCAAGGACGCGCCGGTCGCCGAACTGATCCAGGCGGTACGGGTGATCGCCGCCGGTGACGCGCTGCTCGCCCCGTCCG
TCACCCGTCGCCTCATCGAGGACGTCGCCCGGCGTCGCCCCGCCGTCAGCCACCGGAAACGCCTGCGGCTGAACGGTCTC
ACACCACGGGAGACGGAGGTTCTGCTGCTGGTCGCGCGGGGCCTGTCGAACGCGGAGATCGCCGCGACGCTGGTGGTGGC
CGAACAGACCGTCAAGACCCACATGACCCGGACGCTCGCCAAGCTCGGTGCCCGCGACCGGGCCCAACTCGTCGTCCTGG
CCTACGAGTCCGGGCTGATCACCCCGGGCATGTCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.081

97.788

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

36.245

100

0.367