Detailed information NTG0647394

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1062_RS21900
• Genome accession: NZ_CP091061
• Coordinates: 4520056..4520856 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP29105
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4515056..4525856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1062_RS21865 (L1062_21865)	gspH	4515212..4515727 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
L1062_RS21870 (L1062_21870)	gspI	4515724..4516089 (+)	366	WP_060184290.1	type II secretion system minor pseudopilin GspI	-
L1062_RS21875 (L1062_21875)	gspJ	4516086..4516682 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
L1062_RS21880 (L1062_21880)	gspK	4516679..4517665 (+)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
L1062_RS21885 (L1062_21885)	gspL	4517652..4518845 (+)	1194	WP_012737412.1	type II secretion system protein GspL	-
L1062_RS21890 (L1062_21890)	-	4518838..4519323 (+)	486	WP_012737411.1	type II secretion system protein M	-
L1062_RS21895 (L1062_21895)	-	4519313..4520059 (+)	747	WP_012737410.1	type II secretion system protein N	-
L1062_RS21900 (L1062_21900)	pilD	4520056..4520856 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
L1062_RS21905 (L1062_21905)	hrpB	4520904..4523333 (-)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
L1062_RS21910 (L1062_21910)	thpR	4523406..4523942 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
L1062_RS21915 (L1062_21915)	sfsA	4523942..4524658 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
L1062_RS21920 (L1062_21920)	dksA	4524821..4525276 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=647394 L1062_RS21900 WP_004145898.1 4520056..4520856(+) (pilD) [Klebsiella pneumoniae strain KP29105]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=647394 L1062_RS21900 WP_004145898.1 4520056..4520856(+) (pilD) [Klebsiella pneumoniae strain KP29105]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425