Detailed information NTG0647344

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1P15_RS20910
• Genome accession: NZ_CP091048
• Coordinates: 4279223..4280023 (+)
• Length: 266 a.a.
• NCBI ID: WP_040211570.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain AHSWKP25
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4274223..4285023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1P15_RS20875 (L1P15_20875)	gspH	4274379..4274888 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
L1P15_RS20880 (L1P15_20880)	gspI	4274891..4275256 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
L1P15_RS20885 (L1P15_20885)	gspJ	4275253..4275849 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
L1P15_RS20890 (L1P15_20890)	gspK	4275846..4276832 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
L1P15_RS20895 (L1P15_20895)	gspL	4276819..4278012 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
L1P15_RS20900 (L1P15_20900)	-	4278005..4278490 (+)	486	WP_025368434.1	type II secretion system protein M	-
L1P15_RS20905 (L1P15_20905)	-	4278480..4279226 (+)	747	WP_004145897.1	type II secretion system protein N	-
L1P15_RS20910 (L1P15_20910)	pilD	4279223..4280023 (+)	801	WP_040211570.1	A24 family peptidase	Machinery gene
L1P15_RS20915 (L1P15_20915)	hrpB	4280071..4282500 (-)	2430	WP_040211572.1	ATP-dependent helicase HrpB	-
L1P15_RS20920 (L1P15_20920)	thpR	4282573..4283109 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
L1P15_RS20925 (L1P15_20925)	sfsA	4283109..4283825 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
L1P15_RS20930 (L1P15_20930)	dksA	4283988..4284443 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=647344 L1P15_RS20910 WP_040211570.1 4279223..4280023(+) (pilD) [Klebsiella pneumoniae strain AHSWKP25]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWSRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=647344 L1P15_RS20910 WP_040211570.1 4279223..4280023(+) (pilD) [Klebsiella pneumoniae strain AHSWKP25]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGAGCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421