Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA47_RS38795 Genome accession   NZ_CP107862
Coordinates   8579419..8580084 (+) Length   221 a.a.
NCBI ID   WP_327664780.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00498     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8574419..8585084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA47_RS38775 (OHA47_38775) - 8575422..8576720 (+) 1299 WP_327664776.1 geranylgeranyl reductase family protein -
  OHA47_RS38780 (OHA47_38780) - 8576758..8577216 (-) 459 WP_327664777.1 nitroreductase/quinone reductase family protein -
  OHA47_RS38785 (OHA47_38785) - 8577365..8578090 (+) 726 WP_327664778.1 TetR/AcrR family transcriptional regulator -
  OHA47_RS38790 (OHA47_38790) - 8578169..8579422 (+) 1254 WP_327664779.1 sensor histidine kinase -
  OHA47_RS38795 (OHA47_38795) vraR 8579419..8580084 (+) 666 WP_327664780.1 response regulator transcription factor Regulator
  OHA47_RS38800 (OHA47_38800) - 8580106..8580855 (-) 750 WP_327664781.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHA47_RS38805 (OHA47_38805) - 8580927..8582129 (-) 1203 WP_327666338.1 MFS transporter -
  OHA47_RS38810 (OHA47_38810) - 8582232..8583011 (-) 780 WP_267071627.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHA47_RS38815 (OHA47_38815) - 8583204..8584121 (+) 918 WP_327664782.1 SIS domain-containing protein -
  OHA47_RS38820 (OHA47_38820) - 8584156..8585007 (+) 852 WP_327664783.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23991.77 Da        Isoelectric Point: 4.8021

>NTDB_id=647323 OHA47_RS38795 WP_327664780.1 8579419..8580084(+) (vraR) [Streptomyces sp. NBC_00498]
MIRVLLADDQSLVRAGFRALLDAQSDIEVAGEAADGEEAVRLVRELRPDVVLMDIRMPLLDGLAATRRIGADADLGAVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVHGDALLSPGVTRRLIAEFAARSKEPATVAPLDELTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=647323 OHA47_RS38795 WP_327664780.1 8579419..8580084(+) (vraR) [Streptomyces sp. NBC_00498]
GTGATCCGCGTACTGCTCGCCGACGACCAGTCGCTCGTCCGCGCCGGGTTCAGGGCGCTGCTCGACGCGCAGAGCGACAT
CGAGGTCGCGGGCGAAGCGGCGGACGGCGAGGAAGCGGTGCGCCTGGTGCGCGAACTACGCCCCGACGTCGTACTCATGG
ACATCCGCATGCCGCTGCTCGACGGTCTCGCGGCGACCCGCCGGATCGGCGCGGACGCGGACCTGGGGGCGGTGAAGGTG
GTCATGCTCACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCCATCCGCTCCGGGGCTTCCGGGTTCCTCGTCAAGGA
CACCGAGCCGGAGGAACTACTGCGCGCCGTAAGGGCAGTTGTCCATGGCGACGCGCTGCTCTCGCCTGGCGTCACCCGCC
GCCTGATCGCCGAGTTCGCGGCGCGCTCGAAGGAGCCGGCGACCGTCGCGCCGCTCGACGAACTGACGGAGCGGGAGCGG
GAGGTGATGGCGCTCGTCGGCATCGGCCTGTCCAACGAGGAGATCGCCCGCCGCCTCGTCGTCAGCCCACTCACCGCGAA
GACCCATGTGAGCCGCACGATGGTGAAGCTGGGCGCCCGCGACCGGGCCCAACTGGTCGTCCTGGCCTATGAGTCGGGGC
TCGTGCGGCCGGGGTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

97.285

0.38
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.371