Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA47_RS25105 Genome accession   NZ_CP107862
Coordinates   5503313..5503978 (+) Length   221 a.a.
NCBI ID   WP_266711607.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00498     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5498313..5508978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA47_RS25090 (OHA47_25095) - 5500234..5500866 (-) 633 WP_327662683.1 TetR/AcrR family transcriptional regulator -
  OHA47_RS25095 (OHA47_25100) - 5500994..5501884 (+) 891 WP_327662684.1 alpha/beta hydrolase -
  OHA47_RS25100 (OHA47_25105) - 5501982..5503316 (+) 1335 WP_327662685.1 histidine kinase -
  OHA47_RS25105 (OHA47_25110) vraR 5503313..5503978 (+) 666 WP_266711607.1 response regulator transcription factor Regulator
  OHA47_RS25110 (OHA47_25115) - 5503998..5505227 (+) 1230 WP_327662686.1 cytochrome P450 -
  OHA47_RS25115 (OHA47_25120) - 5505190..5505438 (-) 249 WP_327662687.1 hypothetical protein -
  OHA47_RS25120 (OHA47_25125) - 5505484..5507094 (-) 1611 WP_327662688.1 ABC transporter permease -
  OHA47_RS25125 (OHA47_25130) - 5507091..5508014 (-) 924 WP_327662689.1 ABC transporter ATP-binding protein -
  OHA47_RS25130 (OHA47_25135) - 5508107..5508613 (+) 507 WP_327662690.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24042.80 Da        Isoelectric Point: 4.6799

>NTDB_id=647290 OHA47_RS25105 WP_266711607.1 5503313..5503978(+) (vraR) [Streptomyces sp. NBC_00498]
MIRVLVADDQMMVREGFSVLLNAMPDFEVVGEAVNGVEAIAKVRELRPDVVLMDIRMPELNGIEATREIVAADAGTKVLV
LTTFDLDEYVYQALRAGASGFLLKDASARELADGVRVVASGEALLAPTVTRRLITEFAKLSETSRFPVGRQTGAYGELTE
RETEVLVLIAQGLSNIEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=647290 OHA47_RS25105 WP_266711607.1 5503313..5503978(+) (vraR) [Streptomyces sp. NBC_00498]
GTGATCAGGGTGCTGGTCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTGAACGCCATGCCGGACTT
CGAGGTCGTCGGCGAGGCGGTCAACGGCGTGGAGGCCATCGCCAAGGTCCGCGAACTCCGCCCCGACGTCGTCCTGATGG
ACATCCGCATGCCCGAGCTGAACGGCATCGAGGCGACCCGCGAGATCGTCGCGGCGGACGCGGGCACGAAGGTGCTCGTC
CTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGGGCCGGGGCCTCAGGCTTCCTCCTCAAGGACGCCTC
CGCGCGCGAACTCGCGGACGGCGTAAGGGTGGTGGCGAGCGGCGAGGCCCTCCTCGCGCCGACCGTGACGCGCCGCCTGA
TCACCGAGTTCGCCAAGCTGTCCGAGACGTCGAGGTTCCCCGTGGGGCGGCAGACGGGCGCGTACGGGGAGCTGACCGAG
CGCGAGACGGAGGTGCTCGTCCTGATCGCGCAGGGCCTGTCGAACATCGAGATCGCCGAGCGCCTCGTGGTCGCCGAGTC
GACGATCAAGACGCATGTGAGCCGGGTCCTGGTGAAGCTGGGGCTGCGCGACCGGACGCAGGCGGCGGTGTTCGCGTACG
AGGCACGTCTGGTCACGCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.24

98.19

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

43.119

98.643

0.425