Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA47_RS21735 Genome accession   NZ_CP107862
Coordinates   4822629..4823297 (+) Length   222 a.a.
NCBI ID   WP_327662209.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00498     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4817629..4828297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA47_RS21715 (OHA47_21710) - 4818630..4819772 (-) 1143 WP_327662206.1 YncE family protein -
  OHA47_RS21720 (OHA47_21715) - 4819769..4820371 (-) 603 WP_327662207.1 ankyrin repeat domain-containing protein -
  OHA47_RS21725 (OHA47_21720) - 4820533..4821102 (-) 570 WP_327662208.1 heme-binding protein -
  OHA47_RS21730 (OHA47_21725) - 4821433..4822632 (+) 1200 WP_327666177.1 sensor histidine kinase -
  OHA47_RS21735 (OHA47_21730) vraR 4822629..4823297 (+) 669 WP_327662209.1 response regulator transcription factor Regulator
  OHA47_RS21740 (OHA47_21735) - 4823351..4823851 (+) 501 WP_266712566.1 hypothetical protein -
  OHA47_RS21745 (OHA47_21740) - 4823871..4824581 (-) 711 WP_327662210.1 pentapeptide repeat-containing protein -
  OHA47_RS21750 (OHA47_21745) - 4824792..4826000 (+) 1209 WP_327662211.1 NAD(P)-binding protein -
  OHA47_RS21755 (OHA47_21750) - 4826072..4827088 (+) 1017 WP_327662212.1 zinc-binding dehydrogenase -
  OHA47_RS21760 (OHA47_21755) - 4827104..4827598 (-) 495 WP_327662213.1 nuclear transport factor 2 family protein -
  OHA47_RS21765 (OHA47_21760) - 4827718..4828272 (+) 555 WP_327662214.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23670.10 Da        Isoelectric Point: 5.1463

>NTDB_id=647282 OHA47_RS21735 WP_327662209.1 4822629..4823297(+) (vraR) [Streptomyces sp. NBC_00498]
MTDPGAEMTQPIRILLCDDHVVVRAGLLALLDSAAGIEVVGEAGTGEEAIALAAKLRPDVVLMDLQLGEGMDGVETTRRL
TTDPDDPATGHRPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIHAAAEGRTALSAPVASRVMANMRKPRPT
LTDRERDILAQLAHGLGNREIAKALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 669 bp        

>NTDB_id=647282 OHA47_RS21735 WP_327662209.1 4822629..4823297(+) (vraR) [Streptomyces sp. NBC_00498]
ATGACCGATCCGGGAGCCGAAATGACCCAGCCCATCCGCATCCTCCTCTGTGACGACCACGTCGTCGTTCGTGCCGGGTT
GTTGGCGTTGCTCGACAGTGCGGCGGGGATCGAGGTCGTCGGGGAGGCCGGTACCGGGGAGGAGGCGATCGCGCTCGCCG
CGAAGCTCCGGCCCGACGTCGTCCTCATGGACCTGCAACTGGGCGAGGGCATGGACGGCGTGGAGACGACCCGCCGCCTC
ACCACCGACCCGGACGACCCGGCCACCGGGCACCGCCCCCACGTCCTCGTTCTGACCACGTACGACACCGACGCCGACAT
CACCCGCGCCATCGAGGCGGGCGCGACGGGCTATCTGCTCAAGGCGGAGCGGCCCGAGGAGCTGTTCGCCGCGATCCACG
CGGCCGCGGAGGGCCGCACCGCGCTGTCCGCCCCGGTCGCCAGCCGCGTCATGGCCAATATGCGCAAGCCGCGGCCCACC
CTCACCGACCGCGAGCGCGACATCCTCGCCCAGCTGGCGCACGGCCTCGGCAACCGGGAGATCGCCAAGGCCCTGTTCAT
CAGCGAGGCCACGGTCAAGACCCACCTGGGCCGCATCTACGACAAGCTCGGCGTGGACACCCGGGCCGGCGCCGTCTCGG
TCGCGAAGGAGCAGCGCCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-132)

Bacterial regulatory proteins, luxR family (GerE)

(160-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

96.847

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.36