Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHP34_RS42915 Genome accession   NZ_CP107861
Coordinates   9430659..9431318 (+) Length   219 a.a.
NCBI ID   WP_327660034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9425659..9436318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS42890 (OHP34_42900) - 9426087..9426449 (+) 363 WP_327660039.1 Imm50 family immunity protein -
  OHP34_RS42895 (OHP34_42905) - 9426642..9427352 (+) 711 WP_327660038.1 spermidine synthase -
  OHP34_RS42900 (OHP34_42910) - 9427456..9428319 (-) 864 WP_327660037.1 ABC transporter permease subunit -
  OHP34_RS42905 (OHP34_42915) - 9428316..9429224 (-) 909 WP_327660036.1 ATP-binding cassette domain-containing protein -
  OHP34_RS42910 (OHP34_42920) - 9429358..9430662 (+) 1305 WP_327660035.1 sensor histidine kinase -
  OHP34_RS42915 (OHP34_42925) vraR 9430659..9431318 (+) 660 WP_327660034.1 response regulator transcription factor Regulator
  OHP34_RS42920 (OHP34_42930) - 9431459..9433771 (+) 2313 WP_327660033.1 helix-turn-helix domain-containing protein -
  OHP34_RS42925 (OHP34_42935) - 9434123..9435142 (+) 1020 WP_327660032.1 helix-turn-helix domain-containing protein -
  OHP34_RS42930 (OHP34_42940) - 9435256..9435996 (-) 741 WP_327660031.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23466.02 Da        Isoelectric Point: 4.4862

>NTDB_id=647224 OHP34_RS42915 WP_327660034.1 9430659..9431318(+) (vraR) [Streptomyces sp. NBC_00499]
MTIRVVLADDQPLVRAALQMVITDTTDVQVVGEAADGAEAVRLTAELTPDVVVMDIRMPGMDGIEATRLITTGPGTARIV
VLTTFDEDDHVYGALRAGASGFLVKDMDLDDILAAVRIVAAGDALIAPSVTRRLIKEFADRPAAAPPRRTELERITQRER
EVLTLVGNGLSNAEIADELSISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLVAPSH

Nucleotide


Download         Length: 660 bp        

>NTDB_id=647224 OHP34_RS42915 WP_327660034.1 9430659..9431318(+) (vraR) [Streptomyces sp. NBC_00499]
ATGACCATCCGCGTGGTACTCGCCGACGACCAGCCCCTGGTCCGCGCGGCCCTGCAGATGGTCATCACCGACACCACGGA
CGTCCAGGTCGTGGGCGAGGCCGCTGACGGCGCCGAAGCGGTCCGACTGACAGCGGAACTCACCCCCGACGTAGTGGTGA
TGGACATCCGGATGCCCGGCATGGACGGCATCGAAGCCACCCGCCTGATCACCACGGGCCCCGGCACCGCACGCATTGTT
GTGCTGACGACCTTCGACGAGGACGACCACGTCTATGGAGCGCTGCGCGCCGGCGCATCCGGATTCCTGGTCAAGGACAT
GGACTTGGACGACATCCTCGCCGCAGTCCGTATCGTGGCCGCGGGGGACGCACTCATCGCACCGAGCGTCACCCGCAGAC
TGATAAAGGAGTTCGCGGACCGCCCCGCAGCAGCGCCGCCACGTCGGACAGAGCTCGAGCGCATCACCCAGCGGGAACGC
GAGGTGCTCACCCTGGTCGGCAACGGCCTGTCCAACGCCGAAATCGCCGACGAGCTCTCCATCAGCGTAGCTACCGCCAA
GACCTATCTGACCCGCCTCCTCGCCAAGCTCGACGCACGCGACCGGGTGCAACTCGTGATCCTCGCTTACGAAGCGGGGC
TGGTGGCACCGTCCCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.63

0.37
  degU Bacillus subtilis subsp. subtilis str. 168

35.426

100

0.361